myRT

myRT report for GCA_001282375.1_ASM128237v1

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Seq: LJGI01000095.1 Escherichia coli strain IMT33180 contig_164, whole genome shotgun sequence (2875 bp)
Overview 1 RT 1: 37-2788 bp Neighborhood of RT #1 [37, 2788] PHA02517 RVT-GII GIIM Feature: gene Location: 37-483 bp Feature: domain Description: PHA02517 Location: 40-481 bp Feature: domain Description: PHA0251 7 Location: 40-481 bp Feature: gene Location: 600-2123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873-1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1 680-1 878 bp Feature: gene Location: 2417-2788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LJGI01000017.1 Escherichia coli strain IMT33180 contig_19, whole genome shotgun sequence (47190 bp)
Overview 1 RT 1: 21396-25279 bp Neighborhood of RT #1 [21396, 25284] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 21396-21854 bp Feature: domain Description: dut Location: 21402-21849 bp Feature: domain Description: dut Location: 2 1402 -2 1849 bp Feature: gene Location: 21961-22557 bp Feature: domain Description: slmA Location: 21967-22543 bp Feature: domain Description: slmA Location: 2 1967-2 2 543 bp Feature: gene Location: 22603-23562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22738-23287 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 738-2 32 87 bp Feature: gene Location: 23860-24516 bp Feature: domain Description: pyrE Location: 23878-24511 bp Feature: domain Description: pyrE Location: 2 3878-2 4511 bp Feature: gene Location: 24568-25284 bp Feature: domain Description: rph Location: 24571-25279 bp Feature: domain Description: rph Location: 2 4571-2 52 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)