myRT

myRT report for GCA_001282725.1_Malnutritionisia_massiliensis

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Seq: LN876577.1 Clostridiaceae bacterium mt12 genome assembly Malnutritionisia massiliensis, scaffold scaffold00004, whole genome shotgun sequence (1784 bp)
Overview 1 RT 1: 3-1611 bp Neighborhood of RT #1 [3, 1611] RVT-GII GIIM Feature: gene Location: 3-1262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303-936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303-936 bp Feature: domain Description: GIIM Note: maturase Location: 1017-1230 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 7-1 230 bp Feature: gene Location: 1372-1611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LN876584.1 Clostridiaceae bacterium mt12 genome assembly Malnutritionisia massiliensis, scaffold scaffold00011, whole genome shotgun sequence (296276 bp)
Overview 1 RT 1: 140328-146308 bp 2 RT 2: 174818-179272 bp Neighborhood of RT #1 [140328, 146355] Lys_export Lys_export VanZ RDD RDD RVT-GII GIIM BCCT Neighborhood of RT #2 [174818, 179277] Zot PHA02517 RVT_N RVT-GII GIIM PHA02517 ElaA Feature: gene Location: 140328-141290 bp Feature: domain Description: Lys_export Location: 140349-140577 bp Feature: domain Description: Lys_export Location: 140349-140577 bp Feature: domain Description: Lys_export Location: 140706-141267 bp Feature: domain Description: Lys_export Location: 140706-1412 67 bp Feature: gene Location: 141445-142545 bp Feature: domain Description: VanZ Location: 141589-142027 bp Feature: domain Description: VanZ Location: 141589-142 02 7 bp Feature: domain Description: RDD Location: 142093-142147 bp Feature: domain Description: RDD Location: 142 093-142 147 bp Feature: domain Description: RDD Location: 142180-142504 bp Feature: domain Description: RDD Location: 142 180-142 504 bp Feature: gene Location: 142902-144185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143202-143835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432 02 -143835 bp Feature: domain Description: GIIM Note: maturase Location: 143916-144129 bp Feature: domain Description: GIIM Note: maturase Location: 143916-14412 9 bp Feature: gene Location: 144295-144465 bp Feature: gene Location: 144766-146355 bp Feature: domain Description: BCCT Location: 144850-146308 bp Feature: domain Description: BCCT Location: 144850-146308 bp Feature: gene Location: 174818-175384 bp Feature: domain Description: Zot Location: 174839-175061 bp Feature: domain Description: Zot Location: 174839-175061 bp Feature: gene Location: 175484-175864 bp Feature: domain Description: PHA02517 Location: 175589-175847 bp Feature: domain Description: PHA02 517 Location: 175589-175847 bp Feature: gene Location: 175854-177323 bp Feature: domain Description: RVT_N Location: 175926-176169 bp Feature: domain Description: RVT_N Location: 17592 6-176169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176217-176874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762 17-176874 bp Feature: domain Description: GIIM Note: maturase Location: 176937-177150 bp Feature: domain Description: GIIM Note: maturase Location: 176937-177150 bp Feature: gene Location: 177849-178616 bp Feature: domain Description: PHA02517 Location: 178071-178596 bp Feature: domain Description: PHA02 517 Location: 178071-178596 bp Feature: gene Location: 178834-179277 bp Feature: domain Description: ElaA Location: 178837-179272 bp Feature: domain Description: ElaA Location: 178837-1792 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lys_export (pfam03956), VanZ (pfam04892), RDD (pfam06271), RVT-GII, GIIM (pfam08388), BCCT (pfam02028), Zot (pfam05707), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), ElaA (COG2153)

Seq: LN876586.1 Clostridiaceae bacterium mt12 genome assembly Malnutritionisia massiliensis, scaffold scaffold00013, whole genome shotgun sequence (1005142 bp)
Overview 1 RT 1: 13918-20513 bp 2 RT 2: 836385-839722 bp 3 RT 3: 944671-950117 bp Neighborhood of RT #1 [13918, 20518] LdcC RVT-GII GIIM fabG PDC1_DGC_like Tar Neighborhood of RT #2 [836385, 839722] DnaC HTH_3 COG4584 COG4584 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [944671, 950185] RVT-GII GIIM HpaB NifU Feature: gene Location: 13918-15336 bp Feature: domain Description: LdcC Location: 13933-15313 bp Feature: domain Description: LdcC Location: 13 93 3 -153 13 bp Feature: gene Location: 15593-15763 bp Feature: gene Location: 15873-17156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16173-16806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16173 -16806 bp Feature: domain Description: GIIM Note: maturase Location: 16887-17100 bp Feature: domain Description: GIIM Note: maturase Location: 16887-17100 bp Feature: gene Location: 17582-18322 bp Feature: domain Description: fabG Location: 17591-18317 bp Feature: domain Description: fabG Location: 17591-183 17 bp Feature: gene Location: 18440-20518 bp Feature: domain Description: PDC1_DGC_like Location: 18620-18956 bp Feature: domain Description: PDC1_DGC_like Location: 18620-18956 bp Feature: domain Description: Tar Location: 19172-20513 bp Feature: domain Description: Tar Location: 19172-20513 bp Feature: gene Location: 836385-836999 bp Feature: domain Description: DnaC Location: 836391-836943 bp Feature: domain Description: DnaC Location: 83 63 91-83 6943 bp Feature: gene Location: 836992-838299 bp Feature: domain Description: HTH_3 Location: 837106-837190 bp Feature: domain Description: HTH_3 Location: 83 7106-83 7190 bp Feature: domain Description: COG4584 Location: 837208-837400 bp Feature: domain Description: COG4584 Location: 83 7208-83 7400 bp Feature: domain Description: COG4584 Location: 837421-837808 bp Feature: domain Description: COG4584 Location: 83 7421-83 7808 bp Feature: gene Location: 838327-838989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838360-838528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 83 60-83 8528 bp Feature: domain Description: GIIM Note: maturase Location: 838579-838816 bp Feature: domain Description: GIIM Note: maturase Location: 83 8579-83 8816 bp Feature: gene Location: 839015-839359 bp Feature: domain Description: PHA02517 Location: 839084-839342 bp Feature: domain Description: PHA02517 Location: 83 9084-83 93 42 bp Feature: gene Location: 839450-839722 bp Feature: gene Location: 944671-946038 bp Feature: gene Location: 946317-946487 bp Feature: gene Location: 946597-947880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946897-947530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946897-94753 0 bp Feature: domain Description: GIIM Note: maturase Location: 947611-947824 bp Feature: domain Description: GIIM Note: maturase Location: 947611-947824 bp Feature: gene Location: 949366-949860 bp Feature: domain Description: HpaB Location: 949369-949807 bp Feature: domain Description: HpaB Location: 9493 69-949807 bp Feature: gene Location: 949907-950185 bp Feature: domain Description: NifU Location: 949922-950117 bp Feature: domain Description: NifU Location: 949922-950117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LdcC (COG1982), RVT-GII, GIIM (pfam08388), fabG (PRK12825), PDC1_DGC_like (cd12914), Tar (COG0840), DnaC (COG1484), HTH_3 (pfam01381), COG4584 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed)
HpaB (pfam03241), NifU (pfam01106)

Seq: LN876587.1 Clostridiaceae bacterium mt12 genome assembly Malnutritionisia massiliensis, scaffold scaffold00014, whole genome shotgun sequence (1638131 bp)
Overview 1 RT 1: 61998-69910 bp 2 RT 2: 188954-194267 bp 3 RT 3: 279605-284666 bp 4 RT 4: 685259-690897 bp 5 RT 5: 1504639-1510586 bp 6 RT 6: 1583646-1589965 bp Neighborhood of RT #1 [61998, 70239] SLH SLH SLH PKD PKD PKD PKD PKD PKD RVT-GII Intron_maturas2 HNHc pilus_cpaB SIMIBI Neighborhood of RT #2 [188954, 194267] PinE DUF4158 DDE_Tnp_Tn3 RVT-GII Neighborhood of RT #3 [279605, 284666] PRK07259 RVT-GII GIIM Cas6-I-III Neighborhood of RT #4 [685259, 690923] InsE PHA02517 RVT_N RVT-GII GIIM HNHc YcgL PcnB Neighborhood of RT #5 [1504639, 1510586] holA ComEC_Rec2 RVT-GII GIIM Neighborhood of RT #6 [1583646, 1589979] Gmad2 Gmad2 spore_ybaN_pdaB RVT-GII GIIM ClpA Feature: gene Location: 61998-64646 bp Feature: domain Description: SLH Location: 62097-62217 bp Feature: domain Description: SLH Location: 62097-62217 bp Feature: domain Description: SLH Location: 62277-62406 bp Feature: domain Description: SLH Location: 62277-624 06 bp Feature: domain Description: SLH Location: 62532-62601 bp Feature: domain Description: SLH Location: 62532-62601 bp Feature: domain Description: PKD Location: 62904-63000 bp Feature: domain Description: PKD Location: 62904 -63000 bp Feature: domain Description: PKD Location: 63096-63273 bp Feature: domain Description: PKD Location: 63096-63273 bp Feature: domain Description: PKD Location: 63285-63552 bp Feature: domain Description: PKD Location: 63285-63552 bp Feature: gene Location: 64763-65671 bp Feature: domain Description: PKD Location: 64799-64850 bp Feature: domain Description: PKD Location: 64 799-64 850 bp Feature: domain Description: PKD Location: 65039-65090 bp Feature: domain Description: PKD Location: 65039-65090 bp Feature: domain Description: PKD Location: 65168-65258 bp Feature: domain Description: PKD Location: 65168-65258 bp Feature: gene Location: 66244-68043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66511-67303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66511-67303 bp Feature: domain Description: Intron_maturas2 Location: 67465-67675 bp Feature: domain Description: Intron_maturas2 Location: 674 65-67675 bp Feature: domain Description: HNHc Note: nucleases Location: 67825-68020 bp Feature: domain Description: HNHc Note: nucleases Location: 67825-68020 bp Feature: gene Location: 68654-69430 bp Feature: domain Description: pilus_cpaB Location: 68756-69371 bp Feature: domain Description: pilus_cpaB Location: 68756-69371 bp Feature: gene Location: 69430-70239 bp Feature: domain Description: SIMIBI Location: 69511-69910 bp Feature: domain Description: SIMIBI Location: 69511-69910 bp Feature: gene Location: 188954-189517 bp Feature: domain Description: PinE Location: 188963-189503 bp Feature: domain Description: PinE Location: 188963-189503 bp Feature: gene Location: 189554-192526 bp Feature: domain Description: DUF4158 Location: 189569-190043 bp Feature: domain Description: DUF4 158 Location: 189569-19004 3 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 191312-192470 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 191312-1924 70 bp Feature: gene Location: 192684-192818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192693-192777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192693-192777 bp Feature: gene Location: 192930-193319 bp Feature: gene Location: 193572-194267 bp Feature: gene Location: 279605-280519 bp Feature: domain Description: PRK07259 Location: 279629-280511 bp Feature: domain Description: PRK07259 Location: 279629-280511 bp Feature: gene Location: 280793-280963 bp Feature: gene Location: 281073-282356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281373-282006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281373-282006 bp Feature: domain Description: GIIM Note: maturase Location: 282087-282300 bp Feature: domain Description: GIIM Note: maturase Location: 282087-282300 bp Feature: gene Location: 282790-283479 bp Feature: domain Description: Cas6-I-III Location: 282934-283468 bp Feature: domain Description: Cas6-I-III Location: 282934 -2834 68 bp Feature: gene Location: 284403-284666 bp Feature: gene Location: 685259-685546 bp Feature: domain Description: InsE Location: 685268-685535 bp Feature: domain Description: InsE Location: 685268-685535 bp Feature: gene Location: 685741-686406 bp Feature: domain Description: PHA02517 Location: 685753-686386 bp Feature: domain Description: PHA02517 Location: 685753-686386 bp Feature: gene Location: 687105-688892 bp Feature: domain Description: RVT_N Location: 687180-687420 bp Feature: domain Description: RVT_N Location: 687180-6874 20 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 687474-688131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6874 74 -688131 bp Feature: domain Description: GIIM Note: maturase Location: 688197-688431 bp Feature: domain Description: GIIM Note: maturase Location: 688197-6884 31 bp Feature: domain Description: HNHc Note: nucleases Location: 688629-688806 bp Feature: domain Description: HNHc Note: nucleases Location: 688629-688806 bp Feature: gene Location: 689089-689598 bp Feature: domain Description: YcgL Location: 689164-689419 bp Feature: domain Description: YcgL Location: 689164 -6894 19 bp Feature: gene Location: 689637-690923 bp Feature: domain Description: PcnB Location: 689643-690897 bp Feature: domain Description: PcnB Location: 68964 3-690897 bp Feature: gene Location: 1504639-1505691 bp Feature: domain Description: holA Location: 1504648-1505674 bp Feature: domain Description: holA Location: 1504 64 8-1505674 bp Feature: gene Location: 1505705-1507996 bp Feature: domain Description: ComEC_Rec2 Location: 1506011-1507943 bp Feature: domain Description: ComEC_Rec2 Location: 1506011-150794 3 bp Feature: gene Location: 1508455-1509738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508755-1509388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508755-1509388 bp Feature: domain Description: GIIM Note: maturase Location: 1509469-1509682 bp Feature: domain Description: GIIM Note: maturase Location: 15094 69-1509682 bp Feature: gene Location: 1509848-1510018 bp Feature: gene Location: 1510299-1510586 bp Feature: gene Location: 1583646-1584392 bp Feature: domain Description: Gmad2 Location: 1583802-1584036 bp Feature: domain Description: Gmad2 Location: 1583802-1584 036 bp Feature: domain Description: Gmad2 Location: 1584099-1584348 bp Feature: domain Description: Gmad2 Location: 1584 099-1584 34 8 bp Feature: gene Location: 1584519-1585349 bp Feature: domain Description: spore_ybaN_pdaB Location: 1584756-1585332 bp Feature: domain Description: spore_ybaN_pdaB Location: 1584 756-1585332 bp Feature: gene Location: 1585865-1587148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1586165-1586798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1586165-1586798 bp Feature: domain Description: GIIM Note: maturase Location: 1586879-1587092 bp Feature: domain Description: GIIM Note: maturase Location: 1586879-1587092 bp Feature: gene Location: 1587258-1587428 bp Feature: gene Location: 1587709-1589979 bp Feature: domain Description: ClpA Location: 1587874-1589965 bp Feature: domain Description: ClpA Location: 1587874 -1589965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLH (pfam00395), PKD (smart00089), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), pilus_cpaB (TIGR03177), SIMIBI (cd01983), PinE (COG1961), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526)
PRK07259 (dihydroorotate dehydrogenase), GIIM (pfam08388), Cas6-I-III (cl09782), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), YcgL (pfam05166), PcnB (COG0617), holA (TIGR01128), ComEC_Rec2 (TIGR00361)
Gmad2 (pfam10648), spore_ybaN_pdaB (TIGR02764), ClpA (TIGR02639)