myRT

myRT report for GCA_001283225.2_8205_3_36

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Seq: CYEB01000074.1 Escherichia coli genome assembly 8205_3#36, scaffold ERS139233SCcontig000074, whole genome shotgun sequence (5443 bp)
Overview 1 RT 1: 2139-4530 bp Neighborhood of RT #1 [2139, 4530] DUF1380 RVT-GII GIIM HNHc Feature: gene Location: 2139-2609 bp Ori: CTX58940.1 Feature: domain Description: DUF1380 Location: 2199-2484 bp Feature: domain Description: DUF1 380 Location: 21 99-2484 bp Feature: gene Location: 2606-2797 bp Feature: gene Location: 3111-4385 bp Ori: CTX58980.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3114-3696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 4-3696 bp Feature: domain Description: GIIM Note: maturase Location: 3747-3981 bp Feature: domain Description: GIIM Note: maturase Location: 3747-3981 bp Feature: domain Description: HNHc Note: nucleases Location: 4191-4350 bp Feature: domain Description: HNHc Note: nucleases Location: 41 91 -4350 bp Feature: gene Location: 4333-4530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CYEB01000033.1 Escherichia coli genome assembly 8205_3#36, scaffold ERS139233SCcontig000033, whole genome shotgun sequence (45555 bp)
Overview 1 RT 1: 15395-20714 bp Neighborhood of RT #1 [15395, 20740] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 15395-16624 bp Ori: CTX41102.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 15875-16616 bp Feature: domain Description: YesM Location: 15875-16616 bp Feature: gene Location: 16697-16885 bp Feature: gene Location: 17207-17689 bp Ori: CTX41135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17216-17456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 16-17456 bp Feature: domain Description: GIIM Note: maturase Location: 17504-17684 bp Feature: domain Description: GIIM Note: maturase Location: 17504-17684 bp Feature: gene Location: 17756-18295 bp Ori: CTX41154.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18086-18164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18086-18164 bp Feature: gene Location: 18781-19686 bp Feature: gene Location: 19823-20740 bp Ori: CTX41189.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 19859-20714 bp Feature: domain Description: PFLE_PFLC Location: 19859-2 0714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: CYEB01000003.1 Escherichia coli genome assembly 8205_3#36, scaffold ERS139233SCcontig000003, whole genome shotgun sequence (282487 bp)
Overview 1 RT 1: 12312-19389 bp Neighborhood of RT #1 [12312, 19389] Ail_Lom phage_tail_N Collar RVT-UG17 SLATT_5 Feature: gene Location: 12312-12863 bp Ori: CTW85916.1 Gene: ompX_1 Feature: domain Description: Ail_Lom Location: 12315-12861 bp Feature: domain Description: Ail_Lom Location: 123 15-12861 bp Feature: gene Location: 12928-16329 bp Ori: CTW85927.1 Feature: domain Description: phage_tail_N Location: 12931-13330 bp Feature: domain Description: phage_tail_N Location: 1293 1-13 3 3 0 bp Feature: domain Description: Collar Location: 15649-15787 bp Feature: domain Description: Collar Location: 15649-15787 bp Feature: gene Location: 17026-18396 bp Ori: CTW85941.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17254-17860 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17254-17860 bp Feature: gene Location: 18374-18925 bp Ori: CTW85948.1 Feature: domain Description: SLATT_5 Location: 18383-18896 bp Feature: domain Description: SLATT_5 Location: 183 83 -18896 bp Feature: gene Location: 19291-19389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), Collar (pfam07484), RVT-UG17, SLATT_5 (pfam18160)