myRT

myRT report for GCA_001283785.1_8205_3_70

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Seq: CYFI01000016.1 Escherichia coli genome assembly 8205_3#70, scaffold ERS139267SCcontig000016, whole genome shotgun sequence (103888 bp)
Overview 1 RT 1: 50866-57241 bp Neighborhood of RT #1 [50866, 57264] Psu PRK09678 RVT-UG3 RVT-UG8 PBP2_CrgA_like_5 XdhC Feature: gene Location: 50866-51417 bp Ori: CTY59669.1 Feature: domain Description: Psu Location: 50887-51397 bp Feature: domain Description: Psu Location: 50887-51 397 bp Feature: gene Location: 51423-51695 bp Ori: CTY59688.1 Feature: domain Description: PRK09678 Location: 51432-51597 bp Feature: domain Description: PRK09678 Location: 51 432-51 597 bp Feature: gene Location: 52090-53367 bp Ori: CTY59705.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 52378-52873 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 52378-52873 bp Feature: gene Location: 53358-55376 bp Ori: CTY59724.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 53931-54384 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 53931 -54384 bp Feature: gene Location: 55919-56329 bp Ori: CTY59736.1 Gene: yagP Feature: domain Description: PBP2_CrgA_like_5 Location: 55991-56303 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 55991 -56303 bp Feature: gene Location: 56308-57264 bp Ori: CTY59753.1 Feature: domain Description: XdhC Location: 56386-57241 bp Feature: domain Description: XdhC Location: 56386-57241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG3, RVT-UG8, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975)

Seq: CYFI01000066.1 Escherichia coli genome assembly 8205_3#70, scaffold ERS139267SCcontig000066, whole genome shotgun sequence (4178 bp)
Overview 1 RT 1: 806-3017 bp Neighborhood of RT #1 [806, 3017] CspC RVT-Retrons Feature: gene Location: 806-1009 bp Ori: CTZ03787.1 Gene: cspC Feature: domain Description: CspC Location: 809-1004 bp Feature: domain Description: CspC Location: 809-1004 bp Feature: gene Location: 1014-2153 bp Ori: CTZ03804.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1158-1713 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1158-1713 bp Feature: gene Location: 2175-2357 bp Feature: gene Location: 2727-3017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-Retrons

Seq: CYFI01000033.1 Escherichia coli genome assembly 8205_3#70, scaffold ERS139267SCcontig000033, whole genome shotgun sequence (43486 bp)
Overview 1 RT 1: 3309-5491 bp Neighborhood of RT #1 [3309, 5491] RVT-Retrons HTH_XRE Feature: gene Location: 3309-3440 bp Feature: gene Location: 3502-3939 bp Feature: gene Location: 4063-4959 bp Ori: CTY89259.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4189-4732 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4189-473 2 bp Feature: gene Location: 4991-5299 bp Ori: CTY89279.1 Feature: domain Description: HTH_XRE Location: 5003-5168 bp Feature: domain Description: HTH_XRE Location: 5003 -5168 bp Feature: gene Location: 5336-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: CYFI01000010.1 Escherichia coli genome assembly 8205_3#70, scaffold ERS139267SCcontig000010, whole genome shotgun sequence (158099 bp)
Overview 1 RT 1: 149487-156488 bp Neighborhood of RT #1 [149487, 156496] Phage_GPA RVT-AbiP2 Q Feature: gene Location: 149487-151763 bp Ori: CTY41968.1 Feature: domain Description: Phage_GPA Location: 149886-150873 bp Feature: domain Description: Phage_GPA Location: 14 9886-150873 bp Feature: gene Location: 151867-152085 bp Feature: gene Location: 152251-153795 bp Ori: CTY42004.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 152668-153121 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 152668-153121 bp Feature: gene Location: 154283-155269 bp Feature: gene Location: 155462-156496 bp Ori: CTY42041.1 Feature: domain Description: Q Location: 155465-156488 bp Feature: domain Description: Q Location: 1554 65-1564 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, Q (PHA02536)