myRT

myRT report for GCA_001283825.1_7748_7_25

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Seq: CXZV01000053.1 Escherichia coli genome assembly 7748_7#25, scaffold ERS085358SCcontig000053, whole genome shotgun sequence (19806 bp)
Overview 1 RT 1: 13282-18873 bp Neighborhood of RT #1 [13282, 18896] DUF4755 RVT-UG16 PRK13889 TraD Feature: gene Location: 13282-13755 bp Ori: CTT07661.1 Feature: domain Description: DUF4755 Location: 13390-13741 bp Feature: domain Description: DUF4755 Location: 1 3390-1 3741 bp Feature: gene Location: 14187-14738 bp Feature: gene Location: 14838-16322 bp Ori: CTT07717.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 15201-15609 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 1 5201 -1 5609 bp Feature: gene Location: 16455-17951 bp Ori: CTT07750.1 Gene: mobA_3 Feature: domain Description: PRK13889 Location: 16458-17061 bp Feature: domain Description: PRK1 3889 Location: 1 6458-1 7061 bp Feature: gene Location: 18591-18896 bp Ori: CTT07782.1 Feature: domain Description: TraD Location: 18699-18873 bp Feature: domain Description: TraD Location: 1 8699-1 8873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4755 (pfam15947), RVT-UG16, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412)

Seq: CXZV01000103.1 Escherichia coli genome assembly 7748_7#25, scaffold ERS085358SCcontig000103, whole genome shotgun sequence (1785 bp)
Overview 1 RT 1: 24-492 bp Neighborhood of RT #1 [24, 545] RVT-GII Feature: gene Location: 24-545 bp Ori: CTT28494.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291-492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 91-492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CXZV01000074.1 Escherichia coli genome assembly 7748_7#25, scaffold ERS085358SCcontig000074, whole genome shotgun sequence (7065 bp)
Overview 1 RT 1: 4597-6899 bp Neighborhood of RT #1 [4597, 6994] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4597-4830 bp Ori: CTT20837.1 Gene: ykfF Feature: domain Description: DUF905 Location: 4627-4825 bp Feature: domain Description: DUF905 Location: 4627-4825 bp Feature: gene Location: 4887-5327 bp Ori: CTT20873.1 Gene: ssb_3 Feature: domain Description: PRK13732 Location: 4890-5325 bp Feature: domain Description: PRK13 73 2 Location: 4890-53 25 bp Feature: gene Location: 5522-6994 bp Ori: CTT20906.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5549-6191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5549-6191 bp Feature: domain Description: Intron_maturas2 Location: 6305-6563 bp Feature: domain Description: Intron_maturas2 Location: 63 05-6563 bp Feature: domain Description: HNHc Note: nucleases Location: 6737-6899 bp Feature: domain Description: HNHc Note: nucleases Location: 673 7-6899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)