myRT

myRT report for GCA_001283905.2_8205_3_35

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Seq: CYEA01000004.1 Escherichia coli genome assembly 8205_3#35, scaffold ERS139232SCcontig000004, whole genome shotgun sequence (272666 bp)
Overview 1 RT 1: 263116-270191 bp Neighborhood of RT #1 [263116, 270193] SLATT_5 RVT-UG17 phage_tail_N Collar Ail_Lom Feature: gene Location: 263116-263214 bp Feature: gene Location: 263580-264131 bp Ori: CTW97912.1 Feature: domain Description: SLATT_5 Location: 263589-264102 bp Feature: domain Description: SLATT_5 Location: 263589-2641 02 bp Feature: gene Location: 264109-265479 bp Ori: CTW97925.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 264337-264943 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 264337-264943 bp Feature: gene Location: 266176-269577 bp Ori: CTW97940.1 Feature: domain Description: phage_tail_N Location: 266179-266578 bp Feature: domain Description: phage_tail_N Location: 2661 79-266578 bp Feature: domain Description: Collar Location: 268897-269035 bp Feature: domain Description: Collar Location: 268897-269035 bp Feature: gene Location: 269642-270193 bp Ori: CTW97955.1 Gene: ompX_1 Feature: domain Description: Ail_Lom Location: 269645-270191 bp Feature: domain Description: Ail_Lom Location: 269645-2701 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, phage_tail_N (pfam08400), Collar (pfam07484), Ail_Lom (pfam06316)

Seq: CYEA01000033.1 Escherichia coli genome assembly 8205_3#35, scaffold ERS139232SCcontig000033, whole genome shotgun sequence (40542 bp)
Overview 1 RT 1: 16310-21647 bp Neighborhood of RT #1 [16310, 21655] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 16310-17227 bp Ori: CTY00195.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 16346-17201 bp Feature: domain Description: PFLE_PFLC Location: 16346-172 01 bp Feature: gene Location: 17364-18269 bp Feature: gene Location: 18755-19294 bp Ori: CTY00274.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19085-19163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19085-19163 bp Feature: gene Location: 19361-19843 bp Ori: CTY00312.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19370-19610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19370-19610 bp Feature: domain Description: GIIM Note: maturase Location: 19658-19838 bp Feature: domain Description: GIIM Note: maturase Location: 19658-19838 bp Feature: gene Location: 20165-20353 bp Feature: gene Location: 20426-21655 bp Ori: CTY00366.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 20906-21647 bp Feature: domain Description: YesM Location: 2 0906-2 1647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: CYEA01000055.1 Escherichia coli genome assembly 8205_3#35, scaffold ERS139232SCcontig000055, whole genome shotgun sequence (10936 bp)
Overview 1 RT 1: 2145-4536 bp Neighborhood of RT #1 [2145, 4536] DUF1380 RVT-GII GIIM HNHc Feature: gene Location: 2145-2615 bp Ori: CTY24715.1 Feature: domain Description: DUF1380 Location: 2205-2490 bp Feature: domain Description: DUF13 80 Location: 2205-2490 bp Feature: gene Location: 2612-2803 bp Feature: gene Location: 3117-4391 bp Ori: CTY24787.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3120-3702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 120-3 702 bp Feature: domain Description: GIIM Note: maturase Location: 3753-3987 bp Feature: domain Description: GIIM Note: maturase Location: 3 753 -3 987 bp Feature: domain Description: HNHc Note: nucleases Location: 4197-4356 bp Feature: domain Description: HNHc Note: nucleases Location: 4197-43 56 bp Feature: gene Location: 4339-4536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT-GII, GIIM (pfam08388), HNHc (smart00507)