myRT

myRT report for GCA_001284625.1_8205_3_62

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Seq: CYEU01000071.1 Escherichia coli genome assembly 8205_3#62, scaffold ERS139259SCcontig000071, whole genome shotgun sequence (7546 bp)
Overview 1 RT 1: 887-4460 bp Neighborhood of RT #1 [887, 4585] RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 887-1222 bp Feature: gene Location: 2194-2391 bp Feature: gene Location: 2339-3613 bp Ori: CTZ34671.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2342-2924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2342-2924 bp Feature: domain Description: GIIM Note: maturase Location: 2975-3209 bp Feature: domain Description: GIIM Note: maturase Location: 2975-3209 bp Feature: domain Description: HNHc Note: nucleases Location: 3419-3578 bp Feature: domain Description: HNHc Note: nucleases Location: 341 9-3578 bp Feature: gene Location: 3927-4118 bp Feature: gene Location: 4115-4585 bp Ori: CTZ34738.1 Feature: domain Description: DUF1380 Location: 4175-4460 bp Feature: domain Description: DUF1 380 Location: 41 75-4460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CYEU01000043.1 Escherichia coli genome assembly 8205_3#62, scaffold ERS139259SCcontig000043, whole genome shotgun sequence (27800 bp)
Overview 1 RT 1: 6146-11465 bp Neighborhood of RT #1 [6146, 11491] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 6146-7375 bp Ori: CTZ13480.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 6626-7367 bp Feature: domain Description: YesM Location: 662 6-7367 bp Feature: gene Location: 7448-7636 bp Feature: gene Location: 7958-8440 bp Ori: CTZ13548.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7967-8207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7967-82 07 bp Feature: domain Description: GIIM Note: maturase Location: 8255-8435 bp Feature: domain Description: GIIM Note: maturase Location: 82 55-8435 bp Feature: gene Location: 8507-9046 bp Ori: CTZ13576.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8837-8915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8837-8915 bp Feature: gene Location: 9532-10437 bp Feature: gene Location: 10574-11491 bp Ori: CTZ13654.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 10610-11465 bp Feature: domain Description: PFLE_PFLC Location: 10610-11465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: CYEU01000087.1 Escherichia coli genome assembly 8205_3#62, scaffold ERS139259SCcontig000087, whole genome shotgun sequence (3056 bp)
Overview 1 RT 1: 191-2480 bp Neighborhood of RT #1 [191, 2545] RVT-GII GIIM PHA02517 Feature: gene Location: 191-1714 bp Ori: CTZ39462.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1196 bp Feature: domain Description: GIIM Note: maturase Location: 1271-1469 bp Feature: domain Description: GIIM Note: maturase Location: 1271-1469 bp Feature: gene Location: 2306-2545 bp Ori: CTZ39494.1 Feature: domain Description: PHA02517 Location: 2309-2480 bp Feature: domain Description: PHA02517 Location: 23 09-2480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: CYEU01000001.1 Escherichia coli genome assembly 8205_3#62, scaffold ERS139259SCcontig000001, whole genome shotgun sequence (301588 bp)
Overview 1 RT 1: 31394-38519 bp Neighborhood of RT #1 [31394, 38519] Ail_Lom phage_tail_N ABC_SMC2_euk Collar RVT-UG17 SLATT_5 Feature: gene Location: 31394-31993 bp Ori: CTX51945.1 Gene: ompX_1 Feature: domain Description: Ail_Lom Location: 31397-31991 bp Feature: domain Description: Ail_Lom Location: 31397-31991 bp Feature: gene Location: 32058-35459 bp Ori: CTX51970.1 Feature: domain Description: phage_tail_N Location: 32061-32460 bp Feature: domain Description: phage_tail_N Location: 32061-324 60 bp Feature: domain Description: ABC_SMC2_euk Location: 32508-33519 bp Feature: domain Description: ABC_SMC2_euk Location: 32508-33519 bp Feature: domain Description: Collar Location: 34779-34917 bp Feature: domain Description: Collar Location: 34 779-34 917 bp Feature: gene Location: 36156-37526 bp Ori: CTX51994.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 36384-36990 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 36384 -36990 bp Feature: gene Location: 37504-38055 bp Ori: CTX52017.1 Feature: domain Description: SLATT_5 Location: 37513-38026 bp Feature: domain Description: SLATT_5 Location: 37513-38026 bp Feature: gene Location: 38421-38519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), ABC_SMC2_euk (cd03273), Collar (pfam07484), RVT-UG17, SLATT_5 (pfam18160)