myRT

myRT report for GCA_001284645.2_8205_3_54

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Seq: CYEP01000058.1 Escherichia coli genome assembly 8205_3#54, scaffold ERS139251SCcontig000058, whole genome shotgun sequence (5924 bp)
Overview 1 RT 1: 1401-3667 bp Neighborhood of RT #1 [1401, 3792] RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 1401-1598 bp Feature: gene Location: 1546-2820 bp Ori: CTY32563.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1549-2131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 549-21 31 bp Feature: domain Description: GIIM Note: maturase Location: 2182-2416 bp Feature: domain Description: GIIM Note: maturase Location: 21 82-241 6 bp Feature: domain Description: HNHc Note: nucleases Location: 2626-2785 bp Feature: domain Description: HNHc Note: nucleases Location: 2626-2785 bp Feature: gene Location: 3134-3325 bp Feature: gene Location: 3322-3792 bp Ori: CTY32619.1 Feature: domain Description: DUF1380 Location: 3382-3667 bp Feature: domain Description: DUF1 380 Location: 3382-3667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CYEP01000028.1 Escherichia coli genome assembly 8205_3#54, scaffold ERS139251SCcontig000028, whole genome shotgun sequence (45536 bp)
Overview 1 RT 1: 24797-30134 bp Neighborhood of RT #1 [24797, 30142] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 24797-25714 bp Ori: CTY13386.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 24833-25688 bp Feature: domain Description: PFLE_PFLC Location: 2 4833-2 5688 bp Feature: gene Location: 25851-26756 bp Feature: gene Location: 27242-27781 bp Ori: CTY13438.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27572-27650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7572 -2 7650 bp Feature: gene Location: 27848-28330 bp Ori: CTY13467.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27857-28097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7857-2 8097 bp Feature: domain Description: GIIM Note: maturase Location: 28145-28325 bp Feature: domain Description: GIIM Note: maturase Location: 2 8145-2 832 5 bp Feature: gene Location: 28652-28840 bp Feature: gene Location: 28913-30142 bp Ori: CTY13516.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 29393-30134 bp Feature: domain Description: YesM Location: 2 9393-30134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: CYEP01000005.1 Escherichia coli genome assembly 8205_3#54, scaffold ERS139251SCcontig000005, whole genome shotgun sequence (269561 bp)
Overview 1 RT 1: 330-6294 bp Neighborhood of RT #1 [330, 6294] Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber RVT-UG17 SLATT_5 Feature: gene Location: 330-1067 bp Feature: gene Location: 1198-3234 bp Ori: CTX41030.1 Feature: domain Description: Phage_fiber_2 Location: 1219-1339 bp Feature: domain Description: Phage_fiber_2 Location: 1219-13 3 9 bp Feature: domain Description: Collar Location: 2554-2692 bp Feature: domain Description: Collar Location: 2554-2692 bp Feature: domain Description: Phage_fiber Location: 2743-2782 bp Feature: domain Description: Phage_fiber Location: 2743 -2782 bp Feature: domain Description: Phage_fiber Location: 2839-2878 bp Feature: domain Description: Phage_fiber Location: 283 9-2878 bp Feature: domain Description: Phage_fiber Location: 3037-3076 bp Feature: domain Description: Phage_fiber Location: 3 03 7-3 076 bp Feature: domain Description: Phage_fiber Location: 3082-3115 bp Feature: domain Description: Phage_fiber Location: 3 082-3 115 bp Feature: gene Location: 3931-5301 bp Ori: CTX41049.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4159-4765 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4159-4765 bp Feature: gene Location: 5279-5830 bp Ori: CTX41063.1 Feature: domain Description: SLATT_5 Location: 5288-5801 bp Feature: domain Description: SLATT_5 Location: 5288-5801 bp Feature: gene Location: 6196-6294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), RVT-UG17, SLATT_5 (pfam18160)