myRT

myRT report for GCA_001284745.1_7790_1_91

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Seq: CYCR01000004.1 Escherichia coli genome assembly 7790_1#91, scaffold ERS085424SCcontig000004, whole genome shotgun sequence (272825 bp)
Overview 1 RT 1: 263142-270217 bp Neighborhood of RT #1 [263142, 270219] SLATT_5 RVT-UG17 phage_tail_N Collar Ail_Lom Feature: gene Location: 263142-263240 bp Feature: gene Location: 263606-264157 bp Ori: CTU74452.1 Feature: domain Description: SLATT_5 Location: 263615-264128 bp Feature: domain Description: SLATT_5 Location: 26361 5-2641 28 bp Feature: gene Location: 264135-265505 bp Ori: CTU74470.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 264363-264969 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 264363-264969 bp Feature: gene Location: 266202-269603 bp Ori: CTU74491.1 Feature: domain Description: phage_tail_N Location: 266205-266604 bp Feature: domain Description: phage_tail_N Location: 266205-266604 bp Feature: domain Description: Collar Location: 268923-269061 bp Feature: domain Description: Collar Location: 268923-269061 bp Feature: gene Location: 269668-270219 bp Ori: CTU74506.1 Gene: ompX_1 Feature: domain Description: Ail_Lom Location: 269671-270217 bp Feature: domain Description: Ail_Lom Location: 269671 -27021 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, phage_tail_N (pfam08400), Collar (pfam07484), Ail_Lom (pfam06316)

Seq: CYCR01000031.1 Escherichia coli genome assembly 7790_1#91, scaffold ERS085424SCcontig000031, whole genome shotgun sequence (37099 bp)
Overview 1 RT 1: 15445-20764 bp Neighborhood of RT #1 [15445, 20790] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 15445-16674 bp Ori: CTV80811.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 15925-16666 bp Feature: domain Description: YesM Location: 1592 5-16666 bp Feature: gene Location: 16747-16935 bp Feature: gene Location: 17257-17739 bp Ori: CTV80860.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17266-17506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 66-17506 bp Feature: domain Description: GIIM Note: maturase Location: 17554-17734 bp Feature: domain Description: GIIM Note: maturase Location: 17554-17734 bp Feature: gene Location: 17806-18345 bp Ori: CTV80893.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18136-18214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18136-182 14 bp Feature: gene Location: 18831-19736 bp Feature: gene Location: 19873-20790 bp Ori: CTV80953.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 19909-20764 bp Feature: domain Description: PFLE_PFLC Location: 19909-2 0764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: CYCR01000062.1 Escherichia coli genome assembly 7790_1#91, scaffold ERS085424SCcontig000062, whole genome shotgun sequence (5405 bp)
Overview 1 RT 1: 868-3134 bp Neighborhood of RT #1 [868, 3259] RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 868-1065 bp Feature: gene Location: 1013-2287 bp Ori: CTW04918.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-1598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-1598 bp Feature: domain Description: GIIM Note: maturase Location: 1649-1883 bp Feature: domain Description: GIIM Note: maturase Location: 1649-1883 bp Feature: domain Description: HNHc Note: nucleases Location: 2093-2252 bp Feature: domain Description: HNHc Note: nucleases Location: 2093 -2252 bp Feature: gene Location: 2601-2792 bp Feature: gene Location: 2789-3259 bp Ori: CTW04984.1 Feature: domain Description: DUF1380 Location: 2849-3134 bp Feature: domain Description: DUF13 80 Location: 2849-3 13 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)