myRT

myRT report for GCA_001285645.1_8205_3_23

Download annotations/find similar RTs

Seq: CYDO01000001.1 Escherichia coli genome assembly 8205_3#23, scaffold ERS139220SCcontig000001, whole genome shotgun sequence (417604 bp)
Overview 1 RT 1: 263113-270233 bp Neighborhood of RT #1 [263113, 270235] SLATT_5 RVT-UG17 phage_tail_N 7tmA_amine_R-like Collar Ail_Lom Feature: gene Location: 263113-263211 bp Feature: gene Location: 263577-264128 bp Ori: CTV34216.1 Feature: domain Description: SLATT_5 Location: 263586-264099 bp Feature: domain Description: SLATT_5 Location: 263586-264099 bp Feature: gene Location: 264106-265476 bp Ori: CTV34247.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 264334-264940 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 264334-264940 bp Feature: gene Location: 266173-269571 bp Ori: CTV34279.1 Feature: domain Description: phage_tail_N Location: 266176-266575 bp Feature: domain Description: phage_tail_N Location: 2661 76-266575 bp Feature: domain Description: 7tmA_amine_R-like Location: 267082-267499 bp Feature: domain Description: 7tmA_amine_R-like Location: 267082-267499 bp Feature: domain Description: Collar Location: 268894-269032 bp Feature: domain Description: Collar Location: 268894-269032 bp Feature: gene Location: 269636-270235 bp Ori: CTV34302.1 Gene: ompX_1 Feature: domain Description: Ail_Lom Location: 269639-270233 bp Feature: domain Description: Ail_Lom Location: 269639-270233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Collar (pfam07484), Ail_Lom (pfam06316)

Seq: CYDO01000007.1 Escherichia coli genome assembly 8205_3#23, scaffold ERS139220SCcontig000007, whole genome shotgun sequence (260105 bp)
Overview 1 RT 1: 15422-20741 bp Neighborhood of RT #1 [15422, 20767] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 15422-16651 bp Ori: CTV96350.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 15902-16643 bp Feature: domain Description: YesM Location: 15902 -16643 bp Feature: gene Location: 16724-16912 bp Feature: gene Location: 17234-17716 bp Ori: CTV96410.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17243-17483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 43-17483 bp Feature: domain Description: GIIM Note: maturase Location: 17531-17711 bp Feature: domain Description: GIIM Note: maturase Location: 17531-17711 bp Feature: gene Location: 17783-18322 bp Ori: CTV96443.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18113-18191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18113-18191 bp Feature: gene Location: 18808-19713 bp Feature: gene Location: 19850-20767 bp Ori: CTV96508.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 19886-20741 bp Feature: domain Description: PFLE_PFLC Location: 19886-2 0741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: CYDO01000049.1 Escherichia coli genome assembly 8205_3#23, scaffold ERS139220SCcontig000049, whole genome shotgun sequence (5395 bp)
Overview 1 RT 1: 860-3129 bp Neighborhood of RT #1 [860, 3251] RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 860-1057 bp Feature: gene Location: 1005-2279 bp Ori: CTW79776.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008-1590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008-1590 bp Feature: domain Description: GIIM Note: maturase Location: 1641-1875 bp Feature: domain Description: GIIM Note: maturase Location: 1641-1875 bp Feature: domain Description: HNHc Note: nucleases Location: 2085-2244 bp Feature: domain Description: HNHc Note: nucleases Location: 2085-2244 bp Feature: gene Location: 2593-2784 bp Feature: gene Location: 2781-3251 bp Ori: CTW79801.1 Feature: domain Description: DUF1380 Location: 2841-3129 bp Feature: domain Description: DUF13 80 Location: 2841-3 129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)