myRT

myRT report for GCA_001285705.1_8205_3_56

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Seq: CYET01000071.1 Escherichia coli genome assembly 8205_3#56, scaffold ERS139253SCcontig000071, whole genome shotgun sequence (5386 bp)
Overview 1 RT 1: 863-3129 bp Neighborhood of RT #1 [863, 3254] RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 863-1060 bp Feature: gene Location: 1008-2282 bp Ori: CTZ34877.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1011-1593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 1 -1 593 bp Feature: domain Description: GIIM Note: maturase Location: 1644-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1 644-1 878 bp Feature: domain Description: HNHc Note: nucleases Location: 2088-2247 bp Feature: domain Description: HNHc Note: nucleases Location: 2088-2247 bp Feature: gene Location: 2596-2787 bp Feature: gene Location: 2784-3254 bp Ori: CTZ34946.1 Feature: domain Description: DUF1380 Location: 2844-3129 bp Feature: domain Description: DUF1 380 Location: 2844-31 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CYET01000034.1 Escherichia coli genome assembly 8205_3#56, scaffold ERS139253SCcontig000034, whole genome shotgun sequence (45522 bp)
Overview 1 RT 1: 24790-30127 bp Neighborhood of RT #1 [24790, 30135] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 24790-25707 bp Ori: CTZ06438.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 24826-25681 bp Feature: domain Description: PFLE_PFLC Location: 2 482 6-2 5681 bp Feature: gene Location: 25844-26749 bp Feature: gene Location: 27235-27774 bp Ori: CTZ06502.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27565-27643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7565-2 7643 bp Feature: gene Location: 27841-28323 bp Ori: CTZ06551.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27850-28090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7850-2 8090 bp Feature: domain Description: GIIM Note: maturase Location: 28138-28318 bp Feature: domain Description: GIIM Note: maturase Location: 2 8138-2 8318 bp Feature: gene Location: 28645-28833 bp Feature: gene Location: 28906-30135 bp Ori: CTZ06617.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 29386-30127 bp Feature: domain Description: YesM Location: 2 9386-3012 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: CYET01000004.1 Escherichia coli genome assembly 8205_3#56, scaffold ERS139253SCcontig000004, whole genome shotgun sequence (269287 bp)
Overview 1 RT 1: 263073-269037 bp Neighborhood of RT #1 [263073, 269037] SLATT_5 RVT-UG17 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 263073-263171 bp Feature: gene Location: 263537-264088 bp Ori: CTX86441.1 Feature: domain Description: SLATT_5 Location: 263546-264059 bp Feature: domain Description: SLATT_5 Location: 263 546-264059 bp Feature: gene Location: 264066-265436 bp Ori: CTX86485.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 264294-264900 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 264294-264900 bp Feature: gene Location: 266133-268169 bp Ori: CTX86514.1 Feature: domain Description: Phage_fiber_2 Location: 266154-266274 bp Feature: domain Description: Phage_fiber_2 Location: 266154-266274 bp Feature: domain Description: Collar Location: 267489-267627 bp Feature: domain Description: Collar Location: 267489-267627 bp Feature: domain Description: Phage_fiber Location: 267678-267717 bp Feature: domain Description: Phage_fiber Location: 267678-267717 bp Feature: domain Description: Phage_fiber Location: 267774-267813 bp Feature: domain Description: Phage_fiber Location: 267774-267813 bp Feature: domain Description: Phage_fiber Location: 267972-268011 bp Feature: domain Description: Phage_fiber Location: 267972-268011 bp Feature: domain Description: Phage_fiber Location: 268017-268050 bp Feature: domain Description: Phage_fiber Location: 268017-268050 bp Feature: gene Location: 268300-269037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335)