myRT

myRT report for GCA_001286005.1_7790_1_62

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Seq: CYBU01000070.1 Escherichia coli genome assembly 7790_1#62, scaffold ERS085395SCcontig000070, whole genome shotgun sequence (5425 bp)
Overview 1 RT 1: 2160-4551 bp Neighborhood of RT #1 [2160, 4551] DUF1380 RVT-GII GIIM HNHc Feature: gene Location: 2160-2630 bp Ori: CTV97797.1 Feature: domain Description: DUF1380 Location: 2220-2505 bp Feature: domain Description: DUF1 380 Location: 2220-2505 bp Feature: gene Location: 2627-2818 bp Feature: gene Location: 3132-4406 bp Ori: CTV97873.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3135-3717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 35-371 7 bp Feature: domain Description: GIIM Note: maturase Location: 3768-4002 bp Feature: domain Description: GIIM Note: maturase Location: 3768-4002 bp Feature: domain Description: HNHc Note: nucleases Location: 4212-4371 bp Feature: domain Description: HNHc Note: nucleases Location: 421 2-4371 bp Feature: gene Location: 4354-4551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CYBU01000005.1 Escherichia coli genome assembly 7790_1#62, scaffold ERS085395SCcontig000005, whole genome shotgun sequence (272726 bp)
Overview 1 RT 1: 2423-9500 bp Neighborhood of RT #1 [2423, 9500] Ail_Lom phage_tail_N Collar RVT-UG17 SLATT_5 Feature: gene Location: 2423-2974 bp Ori: CTU40649.1 Gene: ompX_1 Feature: domain Description: Ail_Lom Location: 2426-2972 bp Feature: domain Description: Ail_Lom Location: 2 42 6-2 972 bp Feature: gene Location: 3039-6440 bp Ori: CTU40665.1 Feature: domain Description: phage_tail_N Location: 3042-3441 bp Feature: domain Description: phage_tail_N Location: 3042 -3441 bp Feature: domain Description: Collar Location: 5760-5898 bp Feature: domain Description: Collar Location: 5760-5898 bp Feature: gene Location: 7137-8507 bp Ori: CTU40677.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 7365-7971 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 7365-7971 bp Feature: gene Location: 8485-9036 bp Ori: CTU40689.1 Feature: domain Description: SLATT_5 Location: 8494-9007 bp Feature: domain Description: SLATT_5 Location: 8494-9007 bp Feature: gene Location: 9402-9500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), Collar (pfam07484), RVT-UG17, SLATT_5 (pfam18160)

Seq: CYBU01000033.1 Escherichia coli genome assembly 7790_1#62, scaffold ERS085395SCcontig000033, whole genome shotgun sequence (36209 bp)
Overview 1 RT 1: 5992-11311 bp Neighborhood of RT #1 [5992, 11337] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 5992-7221 bp Ori: CTV60842.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 6472-7213 bp Feature: domain Description: YesM Location: 6472-7213 bp Feature: gene Location: 7294-7482 bp Feature: gene Location: 7804-8286 bp Ori: CTV60915.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7813-8053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7813 -8053 bp Feature: domain Description: GIIM Note: maturase Location: 8101-8281 bp Feature: domain Description: GIIM Note: maturase Location: 8101-8281 bp Feature: gene Location: 8353-8892 bp Ori: CTV60980.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8683-8761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8683 -8761 bp Feature: gene Location: 9378-10283 bp Feature: gene Location: 10420-11337 bp Ori: CTV61085.1 Gene: hpdA Feature: domain Description: PFLE_PFLC Location: 10456-11311 bp Feature: domain Description: PFLE_PFLC Location: 10456-113 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)