myRT

myRT report for GCA_001292745.1_V._cholerae_116-17b

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Seq: CGHE01000092.1 Vibrio cholerae genome assembly V. cholerae 116-17b, scaffold 3_cov_32, whole genome shotgun sequence (261978 bp)
Overview 1 RT 1: 150392-156458 bp Neighborhood of RT #1 [150392, 156460] RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 150392-150952 bp Feature: gene Location: 151037-151183 bp Feature: gene Location: 151686-153359 bp Feature: RT Description: RVT_N Location: 151731-151974 bp Feature: RT Description: RVT_N Location: 1 51 731 -1 51 974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152019-152664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5201 9-1 52664 bp Feature: domain Description: GIIM Note: maturase Location: 152715-152949 bp Feature: domain Description: GIIM Note: maturase Location: 1 5271 5-1 52949 bp Feature: domain Description: HNHc Note: nucleases Location: 153165-153327 bp Feature: domain Description: HNHc Note: nucleases Location: 1 531 65-1 53327 bp Feature: gene Location: 154482-156116 bp Feature: domain Description: groEL Location: 154488-156111 bp Feature: domain Description: groEL Location: 1 54488-1 561 1 1 bp Feature: gene Location: 156170-156460 bp Feature: domain Description: groES Location: 156173-156458 bp Feature: domain Description: groES Location: 1 561 73-1 56458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: CGHE01000061.1 Vibrio cholerae genome assembly V. cholerae 116-17b, scaffold 14_cov_34, whole genome shotgun sequence (138710 bp)
Overview 1 RT 1: 42657-47080 bp Neighborhood of RT #1 [42657, 47613] PRK13374 RVT_N RVT-GII GIIM glgC DDE_Tnp_1_5 Feature: gene Location: 42657-43364 bp Feature: domain Description: PRK13374 Location: 42660-43353 bp Feature: domain Description: PRK13374 Location: 42 660-43353 bp Feature: gene Location: 43814-43933 bp Feature: gene Location: 44201-45673 bp Feature: RT Description: RVT_N Location: 44249-44492 bp Feature: RT Description: RVT_N Location: 442 49-44492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44537-45164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44537-45164 bp Feature: domain Description: GIIM Note: maturase Location: 45224-45449 bp Feature: domain Description: GIIM Note: maturase Location: 452 2 4-45449 bp Feature: gene Location: 46027-46611 bp Feature: domain Description: glgC Location: 46039-46603 bp Feature: domain Description: glgC Location: 46039-46603 bp Feature: gene Location: 46693-47613 bp Feature: domain Description: DDE_Tnp_1_5 Location: 46750-47080 bp Feature: domain Description: DDE_Tnp_1_5 Location: 46750-47080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13374 (DeoD-type purine-nucleoside phosphorylase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), glgC (TIGR02091), DDE_Tnp_1_5 (pfam13737)

Seq: CGHE01000101.1 Vibrio cholerae genome assembly V. cholerae 116-17b, scaffold 229_cov_33, whole genome shotgun sequence (73698 bp)
Overview 1 RT 1: 51926-57778 bp Neighborhood of RT #1 [51926, 57852] PRK06850 RVT-GII GIIM HD_2 Feature: gene Location: 51926-52312 bp Feature: gene Location: 52400-54853 bp Feature: domain Description: PRK06850 Location: 52589-53759 bp Feature: domain Description: PRK06850 Location: 52589-53 759 bp Feature: gene Location: 55338-56726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55668-56286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55668-56286 bp Feature: domain Description: GIIM Note: maturase Location: 56340-56553 bp Feature: domain Description: GIIM Note: maturase Location: 563 40-56553 bp Feature: gene Location: 56972-57175 bp Feature: gene Location: 57247-57852 bp Feature: domain Description: HD_2 Location: 57271-57778 bp Feature: domain Description: HD_2 Location: 57271-57778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06850 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), HD_2 (pfam12917)