myRT

myRT report for GCA_001293855.1_Pma90_32

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Seq: LGLH01000057.1 Pseudomonas syringae pv. maculicola strain 90_32 Pma9032_Scaffold094, whole genome shotgun sequence (45092 bp)
Overview 1 RT 1: 38218-44684 bp Neighborhood of RT #1 [38218, 44684] AAA_15 AAA_15 RVT-Retrons Trypsin_2 Feature: gene Location: 38218-40068 bp Feature: domain Description: AAA_15 Location: 38299-38542 bp Feature: domain Description: AAA_1 5 Location: 38299-38542 bp Feature: domain Description: AAA_15 Location: 38893-39199 bp Feature: domain Description: AAA_1 5 Location: 38893-391 99 bp Feature: gene Location: 40157-40303 bp Feature: gene Location: 40684-42426 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40837-41458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40837-41 458 bp Feature: domain Description: Trypsin_2 Location: 41833-42307 bp Feature: domain Description: Trypsin_2 Location: 41 833-42307 bp Feature: gene Location: 43071-44684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Trypsin_2 (pfam13365)

Seq: LGLH01000067.1 Pseudomonas syringae pv. maculicola strain 90_32 Pma9032_Scaffold023, whole genome shotgun sequence (108649 bp)
Overview 1 RT 1: 100920-108408 bp Neighborhood of RT #1 [100920, 108479] PRK09257 PRK05298 RVT-GII GIIM gltX Feature: gene Location: 100920-102116 bp Feature: domain Description: PRK09257 Location: 100929-102114 bp Feature: domain Description: PRK092 57 Location: 10092 9-102 114 bp Feature: gene Location: 102495-104510 bp Feature: domain Description: PRK05298 Location: 102501-104499 bp Feature: domain Description: PRK052 98 Location: 102 501-104499 bp Feature: gene Location: 105040-106488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105454-106069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105454-106069 bp Feature: domain Description: GIIM Note: maturase Location: 106126-106354 bp Feature: domain Description: GIIM Note: maturase Location: 10612 6-106354 bp Feature: gene Location: 106998-108479 bp Feature: domain Description: gltX Location: 107004-108408 bp Feature: domain Description: gltX Location: 107004-108408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09257 (aromatic amino acid transaminase), PRK05298 (excinuclease ABC subunit UvrB), RVT-GII, GIIM (pfam08388), gltX (PRK14895)

Seq: LGLH01000037.1 Pseudomonas syringae pv. maculicola strain 90_32 Pma9032_Scaffold022, whole genome shotgun sequence (131201 bp)
Overview 1 RT 1: 125782-127543 bp Neighborhood of RT #1 [125782, 128016] TnpB_IS66 RVT-Retrons Feature: gene Location: 125782-125949 bp Feature: domain Description: TnpB_IS66 Location: 125788-125908 bp Feature: domain Description: TnpB_IS66 Location: 125788-125908 bp Feature: gene Location: 126662-126817 bp Feature: gene Location: 126835-128016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126976-127543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126976-127543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-Retrons