myRT

myRT report for GCA_001297725.1_Ecoli_assembly01

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Seq: DF970318.1 Escherichia coli DNA, scaffold: NODE_41, strain: R811, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1 624-1 858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: DF970626.1 Escherichia coli DNA, scaffold: NODE_438, strain: R811, whole genome shotgun sequence (129025 bp)
Overview 1 RT 1: 31591-36400 bp Neighborhood of RT #1 [31591, 36405] PRK09678 PRK09678 Psu RVT-Retrons PRK09692 Feature: gene Location: 31591-32037 bp Feature: domain Description: PRK09678 Location: 31600-31672 bp Feature: domain Description: PRK09678 Location: 31600-31672 bp Feature: domain Description: PRK09678 Location: 31795-31945 bp Feature: domain Description: PRK09678 Location: 31795-31945 bp Feature: gene Location: 32111-32683 bp Feature: domain Description: Psu Location: 32129-32666 bp Feature: domain Description: Psu Location: 32 12 9-32 666 bp Feature: gene Location: 32873-34372 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33584-34139 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33584-34139 bp Feature: gene Location: 34374-35051 bp Feature: gene Location: 35239-36405 bp Feature: domain Description: PRK09692 Location: 35248-36400 bp Feature: domain Description: PRK09692 Location: 352 48-36400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), RVT-Retrons, PRK09692 (Integrase; provisional)