myRT

myRT report for GCA_001298415.1_ASM129841v1

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Seq: LITL01000044.1 Pseudoalteromonas porphyrae strain UCD-SED9 scaffold_43, whole genome shotgun sequence (3212 bp)
Overview 1 RT 1: 1-3205 bp Neighborhood of RT #1 [1, 3212] RVT-GII AXE1 BAAT_C DUF772 Feature: gene Location: 1-953 bp Ori: KPH91947.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295-919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295-91 9 bp Feature: gene Location: 1825-2658 bp Ori: KPH91948.1 Feature: domain Description: AXE1 Location: 1885-2071 bp Feature: domain Description: AXE1 Location: 1 885-2071 bp Feature: domain Description: BAAT_C Location: 2116-2629 bp Feature: domain Description: BAAT_C Location: 21 1 6-2629 bp Feature: gene Location: 2878-3212 bp Ori: KPH91949.1 Feature: domain Description: DUF772 Location: 3043-3205 bp Feature: domain Description: DUF772 Location: 3043-3205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AXE1 (pfam05448), BAAT_C (pfam08840), DUF772 (pfam05598)

Seq: LITL01000063.1 Pseudoalteromonas porphyrae strain UCD-SED9 scaffold_62, whole genome shotgun sequence (983 bp)
Overview 1 RT 1: 88-970 bp Neighborhood of RT #1 [88, 983] RVT-GII Feature: gene Location: 88-983 bp Ori: KPH90458.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 -970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LITL01000040.1 Pseudoalteromonas porphyrae strain UCD-SED9 scaffold_39, whole genome shotgun sequence (9528 bp)
Overview 1 RT 1: 8238-9494 bp Neighborhood of RT #1 [8238, 9528] RVT-GII Feature: gene Location: 8238-8417 bp Feature: gene Location: 8576-9528 bp Ori: KPH92781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8870-9494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8870-9494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LITL01000005.1 Pseudoalteromonas porphyrae strain UCD-SED9 scaffold_4, whole genome shotgun sequence (381227 bp)
Overview 1 RT 1: 335530-342612 bp Neighborhood of RT #1 [335530, 342641] LruC_dom Rhs_assc_core RVT-GII treF PRK10100 Feature: gene Location: 335530-337626 bp Ori: KPH95759.1 Feature: domain Description: LruC_dom Location: 336850-337594 bp Feature: domain Description: LruC_dom Location: 336850-337594 bp Feature: gene Location: 338140-339093 bp Ori: KPH95760.1 Feature: domain Description: Rhs_assc_core Location: 338296-338515 bp Feature: domain Description: Rhs_assc_core Location: 338296-338515 bp Feature: gene Location: 340198-341463 bp Ori: KPH95798.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340402-341092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 04 02-34 1092 bp Feature: gene Location: 341582-341785 bp Ori: KPH95761.1 Feature: domain Description: treF Location: 341687-341765 bp Feature: domain Description: treF Location: 34 1687-34 1765 bp Feature: gene Location: 341949-342641 bp Ori: KPH95762.1 Feature: domain Description: PRK10100 Location: 342198-342612 bp Feature: domain Description: PRK10100 Location: 34 2198-34 2612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LruC_dom (TIGR04456), Rhs_assc_core (TIGR03696), RVT-GII, treF (PRK13270), PRK10100 (transcriptional regulator CsgD)

Seq: LITL01000004.1 Pseudoalteromonas porphyrae strain UCD-SED9 scaffold_3, whole genome shotgun sequence (240456 bp)
Overview 1 RT 1: 4183-9513 bp Neighborhood of RT #1 [4183, 9581] Patatin RVT-UG17 AlsT Feature: gene Location: 4183-4659 bp Feature: gene Location: 4772-5815 bp Ori: KPH95805.1 Feature: domain Description: Patatin Location: 4952-5489 bp Feature: domain Description: Patatin Location: 495 2-5 489 bp Feature: gene Location: 5836-7206 bp Ori: KPH95806.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6064-6667 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6064-6667 bp Feature: gene Location: 7881-8165 bp Feature: gene Location: 8175-9581 bp Ori: KPH95808.1 Feature: domain Description: AlsT Location: 8181-9513 bp Feature: domain Description: AlsT Location: 8181-95 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Patatin (pfam01734), RVT-UG17, AlsT (COG1115)