myRT

myRT report for GCA_001304835.1_ASM130483v1

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Seq: BBZM01000014.1 Clostridia bacterium UC5.1-1F7 DNA, contig: contig00014, whole genome shotgun sequence (127252 bp)
Overview 1 RT 1: 57934-61864 bp Neighborhood of RT #1 [57934, 61864] UgpA UgpE RVT-Retrons RVT-Retrons NAT_SF YoaP Feature: gene Location: 57934-58812 bp Feature: domain Description: UgpA Location: 57952-58798 bp Feature: domain Description: UgpA Location: 57952-58798 bp Feature: gene Location: 58827-59660 bp Feature: domain Description: UgpE Location: 58842-59655 bp Feature: domain Description: UgpE Location: 58842-59655 bp Feature: gene Location: 60105-60626 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60270-60474 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60270-60474 bp Feature: gene Location: 60646-61110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60652-60823 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60652-60823 bp Feature: gene Location: 61122-61814 bp Feature: domain Description: NAT_SF Location: 61278-61395 bp Feature: domain Description: NAT_SF Location: 61 278-61 395 bp Feature: domain Description: YoaP Location: 61677-61803 bp Feature: domain Description: YoaP Location: 61 677-61 803 bp Feature: gene Location: 61727-61864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpA (COG1175), UgpE (COG0395), RVT-Retrons, NAT_SF (cl17182), YoaP (pfam14268)

Seq: BBZM01000036.1 Clostridia bacterium UC5.1-1F7 DNA, contig: contig00036, whole genome shotgun sequence (63969 bp)
Overview 1 RT 1: 63049-63943 bp Neighborhood of RT #1 [63049, 63966] RVT-GII Feature: gene Location: 63049-63225 bp Feature: gene Location: 63426-63617 bp Feature: gene Location: 63664-63966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63667-63943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63667-63943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BBZM01000051.1 Clostridia bacterium UC5.1-1F7 DNA, contig: contig00051, whole genome shotgun sequence (31177 bp)
Overview 1 RT 1: 1-5363 bp Neighborhood of RT #1 [1, 5407] RVT-GII INT_RitC_C_like xerD XerD RVT-GII GIIM HpcH HpcH Feature: gene Location: 1-285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-274 bp Feature: gene Location: 396-671 bp Feature: domain Description: INT_RitC_C_like Location: 417-594 bp Feature: domain Description: INT_RitC_C_like Location: 417-594 bp Feature: gene Location: 734-1459 bp Feature: domain Description: xerD Location: 815-1445 bp Feature: domain Description: xerD Location: 815-1445 bp Feature: gene Location: 2920-3189 bp Feature: domain Description: XerD Location: 2941-3154 bp Feature: domain Description: XerD Location: 2941-3 154 bp Feature: gene Location: 3204-3596 bp Feature: gene Location: 3655-4437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3751-3988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 751-3 988 bp Feature: domain Description: GIIM Note: maturase Location: 4042-4270 bp Feature: domain Description: GIIM Note: maturase Location: 4042-4270 bp Feature: gene Location: 4776-5201 bp Feature: domain Description: HpcH Location: 4782-5184 bp Feature: domain Description: HpcH Location: 4782-5184 bp Feature: gene Location: 5156-5407 bp Feature: domain Description: HpcH Location: 5162-5363 bp Feature: domain Description: HpcH Location: 5162-53 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_RitC_C_like (cd01182), xerD (PRK02436), XerD (COG4974), GIIM (pfam08388), HpcH (COG3836)

Seq: BBZM01000060.1 Clostridia bacterium UC5.1-1F7 DNA, contig: contig00060, whole genome shotgun sequence (24333 bp)
Overview 1 RT 1: 19951-22821 bp Neighborhood of RT #1 [19951, 22832] RVT-GII KOG4768 Feature: gene Location: 19951-20388 bp Feature: gene Location: 20711-20977 bp Feature: gene Location: 21016-21804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21280-21721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21280-21721 bp Feature: gene Location: 21767-21952 bp Feature: gene Location: 22035-22832 bp Feature: domain Description: KOG4768 Location: 22038-22821 bp Feature: domain Description: KOG4 768 Location: 22038-22821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: BBZM01000096.1 Clostridia bacterium UC5.1-1F7 DNA, contig: contig00096, whole genome shotgun sequence (2799 bp)
Overview 1 RT 1: 304-2521 bp Neighborhood of RT #1 [304, 2625] RVT-GII HNHc Feature: gene Location: 304-552 bp Feature: gene Location: 751-2625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1084-1801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1084-1801 bp Feature: domain Description: HNHc Note: nucleases Location: 2383-2521 bp Feature: domain Description: HNHc Note: nucleases Location: 2383-25 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: BBZM01000098.1 Clostridia bacterium UC5.1-1F7 DNA, contig: contig00098, whole genome shotgun sequence (2729 bp)
Overview 1 RT 1: 372-2490 bp Neighborhood of RT #1 [372, 2490] RVT-GII RVT-GII Feature: gene Location: 372-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384-573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384-573 bp Feature: gene Location: 1250-2002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1568-1967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156 8-196 7 bp Feature: gene Location: 1978-2322 bp Feature: gene Location: 2329-2490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BBZM01000099.1 Clostridia bacterium UC5.1-1F7 DNA, contig: contig00099, whole genome shotgun sequence (2600 bp)
Overview 1 RT 1: 106-2399 bp Neighborhood of RT #1 [106, 2399] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 106-1938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 0-1201 bp Feature: domain Description: Intron_maturas2 Location: 1273-1588 bp Feature: domain Description: Intron_maturas2 Location: 127 3-1588 bp Feature: domain Description: HNHc Note: nucleases Location: 1735-1909 bp Feature: domain Description: HNHc Note: nucleases Location: 17 35-1909 bp Feature: gene Location: 2184-2399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BBZM01000100.1 Clostridia bacterium UC5.1-1F7 DNA, contig: contig00100, whole genome shotgun sequence (2505 bp)
Overview 1 RT 1: 105-2228 bp Neighborhood of RT #1 [105, 2228] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 105-1631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108 -8 97 bp Feature: domain Description: Intron_maturas2 Location: 969-1272 bp Feature: domain Description: Intron_maturas2 Location: 969-1272 bp Feature: domain Description: HNHc Note: nucleases Location: 1452-1596 bp Feature: domain Description: HNHc Note: nucleases Location: 1452-1596 bp Feature: gene Location: 1723-1923 bp Feature: gene Location: 1962-2228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BBZM01000121.1 Clostridia bacterium UC5.1-1F7 DNA, contig: contig00121, whole genome shotgun sequence (814 bp)
Overview 1 RT 1: 392-809 bp Neighborhood of RT #1 [392, 811] RVT-GII Feature: gene Location: 392-811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII