myRT

myRT report for GCA_001304875.1_ASM130487v1

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Seq: BBZO01000003.1 Clostridia bacterium UC5.1-2E3 DNA, contig: contig00003, whole genome shotgun sequence (182978 bp)
Overview 1 RT 1: 128541-133474 bp Neighborhood of RT #1 [128541, 133530] PRK14277 ToxN_toxin RVT-GII GIIM ThrE ThrE_2 Feature: gene Location: 128541-129056 bp Feature: domain Description: PRK14277 Location: 128598-129051 bp Feature: domain Description: PRK1 4277 Location: 1 28598-1 29051 bp Feature: gene Location: 129145-129687 bp Feature: domain Description: ToxN_toxin Location: 129157-129637 bp Feature: domain Description: ToxN_toxin Location: 1 291 57-1 29637 bp Feature: gene Location: 130157-131518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130445-131060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 30445-1 31 060 bp Feature: domain Description: GIIM Note: maturase Location: 131120-131342 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 1 20-1 31 342 bp Feature: gene Location: 132302-133075 bp Feature: domain Description: ThrE Location: 132347-133061 bp Feature: domain Description: ThrE Location: 1 32347-1 33061 bp Feature: gene Location: 133072-133530 bp Feature: domain Description: ThrE_2 Location: 133096-133474 bp Feature: domain Description: ThrE_2 Location: 1 33096-1 33474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14277 (chaperone protein DnaJ; Provisional), ToxN_toxin (pfam13958), RVT-GII, GIIM (pfam08388), ThrE (pfam06738), ThrE_2 (pfam12821)

Seq: BBZO01000010.1 Clostridia bacterium UC5.1-2E3 DNA, contig: contig00010, whole genome shotgun sequence (98561 bp)
Overview 1 RT 1: 11222-14790 bp Neighborhood of RT #1 [11222, 14790] RVT-GII RAYT Feature: gene Location: 11222-11497 bp Feature: gene Location: 11840-11983 bp Feature: gene Location: 12607-13455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12703-13357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 703-13357 bp Feature: gene Location: 14059-14364 bp Feature: domain Description: RAYT Location: 14062-14284 bp Feature: domain Description: RAYT Location: 14062 -142 84 bp Feature: gene Location: 14656-14790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RAYT (COG1943)

Seq: BBZO01000016.1 Clostridia bacterium UC5.1-2E3 DNA, contig: contig00016, whole genome shotgun sequence (86638 bp)
Overview 1 RT 1: 11029-14079 bp Neighborhood of RT #1 [11029, 14079] Mob_Pre RVT-GII RVT-GII GIIM Feature: gene Location: 11029-11304 bp Feature: domain Description: Mob_Pre Location: 11044-11302 bp Feature: domain Description: Mob_Pre Location: 11044-113 02 bp Feature: gene Location: 11449-11586 bp Feature: gene Location: 11942-12379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12143-12368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12143 -123 68 bp Feature: gene Location: 12469-13245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12475-12760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12475-12760 bp Feature: domain Description: GIIM Note: maturase Location: 12814-13030 bp Feature: domain Description: GIIM Note: maturase Location: 12814-13 03 0 bp Feature: gene Location: 13416-13892 bp Feature: gene Location: 13876-14079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), RVT-GII, GIIM (pfam08388)

Seq: BBZO01000026.1 Clostridia bacterium UC5.1-2E3 DNA, contig: contig00026, whole genome shotgun sequence (52690 bp)
Overview 1 RT 1: 40139-44245 bp Neighborhood of RT #1 [40139, 44268] RpfG RVT-Retrons RVT-Retrons DAP-DH ProX_deacylase Feature: gene Location: 40139-41239 bp Feature: domain Description: RpfG Location: 40145-41228 bp Feature: domain Description: RpfG Location: 4 014 5-4 1228 bp Feature: gene Location: 41465-41620 bp Feature: gene Location: 41646-42080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41850-42054 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 1850-4 2054 bp Feature: gene Location: 42074-42565 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42104-42404 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 2104 -4 24 04 bp Feature: gene Location: 42787-43773 bp Feature: domain Description: DAP-DH Location: 42793-43762 bp Feature: domain Description: DAP-DH Location: 4 2793-4 3762 bp Feature: gene Location: 43792-44268 bp Feature: domain Description: ProX_deacylase Location: 43804-44245 bp Feature: domain Description: ProX_deacylase Location: 4 3804 -4 4 24 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpfG (COG3437), RVT-Retrons, DAP-DH (TIGR01921), ProX_deacylase (cd04333)