myRT

myRT report for GCA_001304895.1_ASM130489v1

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Seq: BBZP01000003.1 Clostridia bacterium UC5.1-1A9 DNA, contig: contig00003, whole genome shotgun sequence (98869 bp)
Overview 1 RT 1: 32783-35239 bp Neighborhood of RT #1 [32783, 35239] Phage_holin_Dp1 RVT-DGRs Feature: gene Location: 32783-32998 bp Feature: domain Description: Phage_holin_Dp1 Location: 32792-32978 bp Feature: domain Description: Phage_holin_Dp1 Location: 32792-32978 bp Feature: gene Location: 32985-33248 bp Feature: gene Location: 33552-34073 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33684-34008 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33684-34008 bp Feature: gene Location: 34067-34465 bp Feature: gene Location: 34751-35239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs

Seq: BBZP01000014.1 Clostridia bacterium UC5.1-1A9 DNA, contig: contig00014, whole genome shotgun sequence (62755 bp)
Overview 1 RT 1: 40295-44191 bp Neighborhood of RT #1 [40295, 44202] MATE_SpoVB_like Polysacc_synt_C RVT-GII GIIM DctQ DctQ Feature: gene Location: 40295-40591 bp Feature: domain Description: MATE_SpoVB_like Location: 40298-40418 bp Feature: domain Description: MATE_SpoVB_like Location: 402 98-40418 bp Feature: gene Location: 40638-40916 bp Feature: domain Description: Polysacc_synt_C Location: 40641-40875 bp Feature: domain Description: Polysacc_synt_C Location: 40641-40875 bp Feature: gene Location: 41060-42451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41375-41999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41375-41999 bp Feature: domain Description: GIIM Note: maturase Location: 42056-42269 bp Feature: domain Description: GIIM Note: maturase Location: 42 056-42 2 69 bp Feature: gene Location: 42953-43456 bp Feature: domain Description: DctQ Location: 42956-43448 bp Feature: domain Description: DctQ Location: 42 956-43448 bp Feature: gene Location: 43453-44202 bp Feature: domain Description: DctQ Location: 43564-44191 bp Feature: domain Description: DctQ Location: 43564-44191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_SpoVB_like (cd13124), Polysacc_synt_C (pfam14667), RVT-GII, GIIM (pfam08388), DctQ (pfam04290)

Seq: BBZP01000077.1 Clostridia bacterium UC5.1-1A9 DNA, contig: contig00077, whole genome shotgun sequence (26787 bp)
Overview 1 RT 1: 757-4283 bp Neighborhood of RT #1 [757, 4283] YuiF RVT-Retrons LysR Feature: gene Location: 757-1728 bp Feature: domain Description: YuiF Location: 790-1726 bp Feature: domain Description: YuiF Location: 790-1726 bp Feature: gene Location: 1885-2037 bp Feature: gene Location: 2389-3117 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2395-2851 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 95-2851 bp Feature: gene Location: 3304-4107 bp Feature: domain Description: LysR Location: 3343-3979 bp Feature: domain Description: LysR Location: 3 3 43 -3 979 bp Feature: gene Location: 4149-4283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, LysR (COG0583), YuiF (COG2056)

Seq: BBZP01000085.1 Clostridia bacterium UC5.1-1A9 DNA, contig: contig00085, whole genome shotgun sequence (23831 bp)
Overview 1 RT 1: 10826-14399 bp Neighborhood of RT #1 [10826, 14399] M14_ASTE_ASPA-like RVT-GII GIIM Feature: gene Location: 10826-11362 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 10895-11357 bp Feature: domain Description: M14 _ASTE_ASPA-like Location: 10895-11357 bp Feature: gene Location: 11853-12014 bp Feature: gene Location: 12328-13626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12586-13273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12586-13273 bp Feature: domain Description: GIIM Note: maturase Location: 13351-13558 bp Feature: domain Description: GIIM Note: maturase Location: 13351-13558 bp Feature: gene Location: 13753-13968 bp Feature: gene Location: 13983-14399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M14_ASTE_ASPA-like (cd06910), RVT-GII, GIIM (pfam08388)