myRT

myRT report for GCA_001304915.1_ASM130491v1

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Seq: BBZQ01000002.1 Clostridia bacterium UC5.1-1F8 DNA, contig: contig00002, whole genome shotgun sequence (311248 bp)
Overview 1 RT 1: 257288-263374 bp 2 RT 2: 275201-281111 bp 3 RT 3: 296917-299994 bp Neighborhood of RT #1 [257288, 263478] RVT-GII HNHc COG4646 COG4646 Neighborhood of RT #2 [275201, 281111] VirD4 RVT-GII HNHc Neighborhood of RT #3 [296917, 299994] RVT-GII RVT-GII group_II_RT_mat HNHc Feature: gene Location: 257288-258550 bp Feature: gene Location: 258547-259629 bp Feature: gene Location: 260304-262175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260625-261360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260625-261 360 bp Feature: domain Description: HNHc Note: nucleases Location: 261915-262056 bp Feature: domain Description: HNHc Note: nucleases Location: 261 91 5-262056 bp Feature: gene Location: 262445-262864 bp Feature: domain Description: COG4646 Location: 262610-262853 bp Feature: domain Description: COG4646 Location: 26261 0-262853 bp Feature: gene Location: 262900-263478 bp Feature: domain Description: COG4646 Location: 263041-263374 bp Feature: domain Description: COG4646 Location: 263041 -263374 bp Feature: gene Location: 275201-277165 bp Feature: domain Description: VirD4 Location: 275930-277160 bp Feature: domain Description: VirD4 Location: 275930-2771 60 bp Feature: gene Location: 277204-277452 bp Feature: gene Location: 278459-279853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278774-279500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278774-279500 bp Feature: gene Location: 279910-280329 bp Feature: domain Description: HNHc Note: nucleases Location: 280051-280219 bp Feature: domain Description: HNHc Note: nucleases Location: 280051 -28021 9 bp Feature: gene Location: 280881-281111 bp Feature: gene Location: 296917-297243 bp Feature: gene Location: 297334-297474 bp Feature: gene Location: 297977-298549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298292-298520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298292-298520 bp Feature: gene Location: 298546-299076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298549-298990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298549-298990 bp Feature: gene Location: 298998-299804 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 299043-299235 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 299043-299235 bp Feature: domain Description: HNHc Note: nucleases Location: 299541-299682 bp Feature: domain Description: HNHc Note: nucleases Location: 299541 -299682 bp Feature: gene Location: 299854-299994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class ), VirD4 (COG3505), group_II_RT_mat (TIGR04416)

Seq: BBZQ01000005.1 Clostridia bacterium UC5.1-1F8 DNA, contig: contig00005, whole genome shotgun sequence (246105 bp)
Overview 1 RT 1: 46136-50566 bp Neighborhood of RT #1 [46136, 50916] PHA00653 Avd_like RVT-DGRs RVT-DGRs Phage_holin_4_1 FlgJ PGRP Feature: gene Location: 46136-47176 bp Feature: domain Description: PHA00653 Location: 46172-47168 bp Feature: domain Description: PHA00653 Location: 46172 -47168 bp Feature: gene Location: 47227-47661 bp Feature: domain Description: Avd_like Location: 47314-47614 bp Feature: domain Description: Avd_like Location: 47314-47614 bp Feature: gene Location: 47983-48363 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48190-48289 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48190-482 89 bp Feature: gene Location: 48260-49018 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48266-48884 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 482 66-48884 bp Feature: gene Location: 49083-49571 bp Feature: domain Description: Phage_holin_4_1 Location: 49125-49479 bp Feature: domain Description: Phage_holin_4_1 Location: 4912 5-49479 bp Feature: gene Location: 49699-50916 bp Feature: domain Description: FlgJ Location: 49708-50083 bp Feature: domain Description: FlgJ Location: 49708-50083 bp Feature: domain Description: PGRP Location: 50164-50566 bp Feature: domain Description: PGRP Location: 50164-50566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), FlgJ (COG1705), PGRP (smart00701)

Seq: BBZQ01000023.1 Clostridia bacterium UC5.1-1F8 DNA, contig: contig00023, whole genome shotgun sequence (103047 bp)
Overview 1 RT 1: 32130-36727 bp 2 RT 2: 40252-46002 bp 3 RT 3: 66221-70565 bp Neighborhood of RT #1 [32130, 36732] TraG_VirD4 RVT_N RVT-GII GIIM TraG-D_C Maff2 Neighborhood of RT #2 [40252, 46002] RVT-GII RVT-GII RVT-GII HNHc Neighborhood of RT #3 [66221, 70565] COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 32130-32537 bp Feature: gene Location: 32534-32908 bp Feature: domain Description: TraG_VirD4 Location: 32618-32792 bp Feature: domain Description: TraG_VirD4 Location: 3 2618-3 2792 bp Feature: gene Location: 33489-35153 bp Feature: domain Description: RVT_N Location: 33534-33777 bp Feature: domain Description: RVT_N Location: 3 3 53 4-3 3 777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33822-34473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 822-3 4473 bp Feature: domain Description: GIIM Note: maturase Location: 34524-34758 bp Feature: domain Description: GIIM Note: maturase Location: 3 4524-3 4758 bp Feature: gene Location: 35356-36393 bp Feature: domain Description: TraG-D_C Location: 35839-36193 bp Feature: domain Description: TraG-D_C Location: 3 583 9-3 6193 bp Feature: gene Location: 36511-36732 bp Feature: domain Description: Maff2 Location: 36520-36727 bp Feature: domain Description: Maff2 Location: 3 6520-3 6727 bp Feature: gene Location: 40252-40383 bp Feature: gene Location: 40541-40741 bp Feature: gene Location: 40741-41424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41128-41392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41128-413 92 bp Feature: gene Location: 41442-41921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41445-41865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41445-41865 bp Feature: gene Location: 41914-42717 bp Feature: gene Location: 42784-42999 bp Feature: gene Location: 43285-43533 bp Feature: gene Location: 43732-45378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44068-44785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44068-44785 bp Feature: gene Location: 45413-45613 bp Feature: domain Description: HNHc Note: nucleases Location: 45416-45503 bp Feature: domain Description: HNHc Note: nucleases Location: 45416-45503 bp Feature: gene Location: 45793-46002 bp Feature: gene Location: 66221-66748 bp Feature: domain Description: COG4646 Location: 66224-66617 bp Feature: domain Description: COG4646 Location: 66224-66617 bp Feature: gene Location: 66918-67163 bp Feature: gene Location: 67549-69024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67555-68299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67555-68299 bp Feature: domain Description: Intron_maturas2 Location: 68404-68620 bp Feature: domain Description: Intron_maturas2 Location: 68404-68620 bp Feature: domain Description: HNHc Note: nucleases Location: 68800-68986 bp Feature: domain Description: HNHc Note: nucleases Location: 68800-68986 bp Feature: gene Location: 69167-69856 bp Feature: domain Description: KOG1000 Location: 69524-69734 bp Feature: domain Description: KOG1000 Location: 69524-6973 4 bp Feature: gene Location: 69849-70565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), Maff2 (pfam12750), HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: BBZQ01000045.1 Clostridia bacterium UC5.1-1F8 DNA, contig: contig00045, whole genome shotgun sequence (56494 bp)
Overview 1 RT 1: 50770-53905 bp Neighborhood of RT #1 [50770, 53905] RVT-GII GIIM Feature: gene Location: 50770-51336 bp Feature: gene Location: 51339-51668 bp Feature: gene Location: 51772-53166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52090-52714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52090-52714 bp Feature: domain Description: GIIM Note: maturase Location: 52771-52981 bp Feature: domain Description: GIIM Note: maturase Location: 52771-52981 bp Feature: gene Location: 53257-53475 bp Feature: gene Location: 53672-53905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BBZQ01000053.1 Clostridia bacterium UC5.1-1F8 DNA, contig: contig00053, whole genome shotgun sequence (36940 bp)
Overview 1 RT 1: 13708-17002 bp Neighborhood of RT #1 [13708, 17002] PRK14806 AroA RVT-Retrons RVT-Retrons DUF2871 Feature: gene Location: 13708-14088 bp Feature: domain Description: PRK14806 Location: 13714-14086 bp Feature: domain Description: PRK14806 Location: 13714-14086 bp Feature: gene Location: 14103-14420 bp Feature: domain Description: AroA Location: 14109-14412 bp Feature: domain Description: AroA Location: 14109-14412 bp Feature: gene Location: 14580-14990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14583-14703 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 145 83-14703 bp Feature: gene Location: 15042-15176 bp Feature: gene Location: 15237-15584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15402-15579 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15 402-15 5 79 bp Feature: gene Location: 15988-16371 bp Feature: domain Description: DUF2871 Location: 16024-16330 bp Feature: domain Description: DUF2871 Location: 16024-16330 bp Feature: gene Location: 16373-17002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), AroA (COG0128), RVT-Retrons, DUF2871 (pfam11070)

Seq: BBZQ01000068.1 Clostridia bacterium UC5.1-1F8 DNA, contig: contig00068, whole genome shotgun sequence (19708 bp)
Overview 1 RT 1: 9862-14865 bp Neighborhood of RT #1 [9862, 15065] RVT-GII HNHc TraC-F-type Feature: gene Location: 9862-10164 bp Feature: gene Location: 10257-10835 bp Feature: gene Location: 11558-13102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11894-12632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11894-126 32 bp Feature: gene Location: 12945-13532 bp Feature: domain Description: HNHc Note: nucleases Location: 13188-13326 bp Feature: domain Description: HNHc Note: nucleases Location: 13188-13326 bp Feature: gene Location: 13698-15065 bp Feature: domain Description: TraC-F-type Location: 13722-14865 bp Feature: domain Description: TraC-F-type Location: 13722-1486 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746)

Seq: BBZQ01000096.1 Clostridia bacterium UC5.1-1F8 DNA, contig: contig00096, whole genome shotgun sequence (2504 bp)
Overview 1 RT 1: 278-2366 bp Neighborhood of RT #1 [278, 2401] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 278-544 bp Feature: gene Location: 583-783 bp Feature: gene Location: 875-2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87 8-1667 bp Feature: domain Description: Intron_maturas2 Location: 1739-2042 bp Feature: domain Description: Intron_maturas2 Location: 17 39-2042 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BBZQ01000105.1 Clostridia bacterium UC5.1-1F8 DNA, contig: contig00105, whole genome shotgun sequence (1638 bp)
Overview 1 RT 1: 236-1637 bp Neighborhood of RT #1 [236, 1637] RVT-GII Feature: gene Location: 236-1132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1055 bp Feature: gene Location: 1488-1637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII