myRT

myRT report for GCA_001306025.1_ASM130602v1

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Seq: KQ464178.1 Citrobacter freundii strain ST1 genomic scaffold Scaffold1, whole genome shotgun sequence (3448390 bp)
Overview 1 RT 1: 957333-961196 bp Neighborhood of RT #1 [957333, 961196] PRK09692 RVT-UG7 Feature: gene Location: 957333-957512 bp Feature: gene Location: 957640-958824 bp Feature: domain Description: PRK09692 Location: 957646-958801 bp Feature: domain Description: PRK09692 Location: 957646-958801 bp Feature: gene Location: 958817-959899 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 959225-959654 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 959225-959654 bp Feature: gene Location: 959953-960459 bp Feature: gene Location: 960786-961196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG7

Seq: KQ464180.1 Citrobacter freundii strain ST1 genomic scaffold Scaffold3, whole genome shotgun sequence (57583 bp)
Overview 1 RT 1: 3871-7019 bp 2 RT 2: 34901-38994 bp Neighborhood of RT #1 [3871, 7033] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Neighborhood of RT #2 [34901, 39059] COG3547 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3871-4374 bp Feature: domain Description: DDE_Tnp_IS1 Location: 3982-4372 bp Feature: domain Description: DDE_Tnp_IS1 Location: 3982 -4372 bp Feature: gene Location: 4293-4568 bp Feature: domain Description: InsA Location: 4296-4560 bp Feature: domain Description: InsA Location: 42 96-4560 bp Feature: gene Location: 4720-5730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4726-5338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472 6-5338 bp Feature: gene Location: 5705-6307 bp Feature: gene Location: 6608-7033 bp Feature: domain Description: PRK10276 Location: 6611-7019 bp Feature: domain Description: PRK102 76 Location: 6611-7019 bp Feature: gene Location: 34901-35977 bp Feature: domain Description: COG3547 Location: 34940-35861 bp Feature: domain Description: COG3547 Location: 34940-35861 bp Feature: gene Location: 36196-36396 bp Feature: domain Description: PHA02517 Location: 36199-36361 bp Feature: domain Description: PHA02 517 Location: 36199-36361 bp Feature: gene Location: 36519-38042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36792-37524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36792 -3752 4 bp Feature: domain Description: GIIM Note: maturase Location: 37599-37797 bp Feature: domain Description: GIIM Note: maturase Location: 37599-37797 bp Feature: gene Location: 37996-38421 bp Feature: gene Location: 38634-39059 bp Feature: domain Description: PHA02517 Location: 38658-38994 bp Feature: domain Description: PHA02 517 Location: 38658-38994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)

Seq: LJOF01000014.1 Citrobacter freundii strain ST1 Scaffold5_1, whole genome shotgun sequence (18680 bp)
Overview 1 RT 1: 14974-18240 bp Neighborhood of RT #1 [14974, 18242] PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 14974-15405 bp Feature: domain Description: PRK10276 Location: 15025-15388 bp Feature: domain Description: PRK10276 Location: 15025-153 88 bp Feature: gene Location: 15471-15881 bp Feature: gene Location: 15906-17393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16311-17001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 11-17001 bp Feature: gene Location: 17545-17820 bp Feature: domain Description: InsA Location: 17548-17812 bp Feature: domain Description: InsA Location: 17548-17812 bp Feature: gene Location: 17739-18242 bp Feature: domain Description: DDE_Tnp_IS1 Location: 17850-18240 bp Feature: domain Description: DDE_Tnp_IS1 Location: 17850-18240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)