myRT

myRT report for GCA_001306215.1_ASM130621v1

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Seq: LIZL01000068.1 Vibrio splendidus strain UCD-SED10 scaffold_67, whole genome shotgun sequence (18382 bp)
Overview 1 RT 1: 1-12077 bp Neighborhood of RT #1 [1, 12586] RVT-UG1 UvrD UvrD UvrD YbjD SMC_N YbjD Feature: gene Location: 1-2568 bp Feature: gene Location: 3309-3644 bp Feature: gene Location: 4035-7880 bp Ori: KPL97055.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 4677-5196 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 4677-51 96 bp Feature: gene Location: 9012-10661 bp Ori: KPL97056.1 Feature: domain Description: UvrD Location: 9054-9333 bp Feature: domain Description: UvrD Location: 9054-9333 bp Feature: domain Description: UvrD Location: 9411-10140 bp Feature: domain Description: UvrD Location: 941 1 -1 01 40 bp Feature: domain Description: UvrD Location: 10341-10623 bp Feature: domain Description: UvrD Location: 1 0341 -1 0623 bp Feature: gene Location: 10658-12586 bp Ori: KPL97057.1 Feature: domain Description: YbjD Location: 10661-11153 bp Feature: domain Description: YbjD Location: 1 0661 -1 1 1 53 bp Feature: domain Description: SMC_N Location: 11435-11588 bp Feature: domain Description: SMC_N Location: 1 1 435-1 1 588 bp Feature: domain Description: YbjD Location: 11594-12077 bp Feature: domain Description: YbjD Location: 1 1 594-1 2077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, UvrD (COG0210), YbjD (COG3593), SMC_N (pfam02463)

Seq: LIZL01000063.1 Vibrio splendidus strain UCD-SED10 scaffold_62, whole genome shotgun sequence (23978 bp)
Overview 1 RT 1: 2522-9208 bp Neighborhood of RT #1 [2522, 9246] MutY RVT-UG25 CspC RVT-Retrons DUF2384 Feature: gene Location: 2522-3535 bp Ori: KPL97162.1 Feature: domain Description: MutY Location: 2546-3521 bp Feature: domain Description: MutY Location: 2 546-352 1 bp Feature: gene Location: 3725-4603 bp Feature: gene Location: 4603-6327 bp Ori: KPL97164.1 Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 5023-5410 bp Feature: RT Description: RVT-UG2 5 Note: UG2 5 RT Location: 502 3-5410 bp Feature: gene Location: 6491-6700 bp Ori: KPL97165.1 Feature: domain Description: CspC Location: 6509-6692 bp Feature: domain Description: CspC Location: 6509-6692 bp Feature: gene Location: 6700-7887 bp Ori: KPL97166.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6847-7414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6847-7414 bp Feature: gene Location: 7927-8130 bp Feature: gene Location: 8911-9246 bp Ori: KPL97168.1 Feature: domain Description: DUF2384 Location: 9061-9208 bp Feature: domain Description: DUF2 384 Location: 9061-92 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutY (COG1194), RVT-UG25, CspC (COG1278), RVT-Retrons, DUF2384 (pfam09722)