myRT

myRT report for GCA_001306495.1_ASM130649v1

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Seq: LKKS01000033.1 Pseudomonas putida strain HB13667 contig00038, whole genome shotgun sequence (174857 bp)
Overview 1 RT 1: 7231-10525 bp Neighborhood of RT #1 [7231, 10542] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 7231-7833 bp Feature: gene Location: 7830-8147 bp Feature: gene Location: 8158-9312 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8404-9160 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8404-91 60 bp Feature: gene Location: 9516-9872 bp Feature: domain Description: Avd_like Location: 9543-9849 bp Feature: domain Description: Avd_like Location: 9543-9849 bp Feature: gene Location: 9925-10542 bp Feature: domain Description: DUF1566 Location: 10159-10525 bp Feature: domain Description: DUF1 566 Location: 1 01 59-1 0525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: LKKS01000057.1 Pseudomonas putida strain HB13667 contig00065, whole genome shotgun sequence (104573 bp)
Overview 1 RT 1: 79737-83000 bp Neighborhood of RT #1 [79737, 83050] fmt def RVT_N RVT-GII YkfC HNH Feature: gene Location: 79737-80669 bp Feature: domain Description: fmt Location: 79740-80652 bp Feature: domain Description: fmt Location: 79740-80652 bp Feature: gene Location: 80730-81236 bp Feature: domain Description: def Location: 80733-81219 bp Feature: domain Description: def Location: 80733-812 19 bp Feature: gene Location: 81344-83050 bp Feature: RT Description: RVT_N Location: 81401-81644 bp Feature: RT Description: RVT_N Location: 81401-81644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81689-82322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81689-82 32 2 bp Feature: domain Description: YkfC Location: 82523-82685 bp Feature: domain Description: YkfC Location: 82 52 3-82 685 bp Feature: domain Description: HNH Note: nucleases Location: 82862-83000 bp Feature: domain Description: HNH Note: nucleases Location: 82 862 -83000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fmt (TIGR00460), def (PRK00150), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)