myRT

myRT report for GCA_001306515.1_ASM130651v1

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Seq: LKKT01000063.1 Pseudomonas putida strain HB4184 contig00073, whole genome shotgun sequence (1888 bp)
Overview 1 RT 1: 76-1243 bp Neighborhood of RT #1 [76, 1425] RVT-GII GIIM Feature: gene Location: 76-1425 bp Ori: KPM62892.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-973 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1243 bp Feature: domain Description: GIIM Note: maturase Location: 1 030-1 243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LKKT01000007.1 Pseudomonas putida strain HB4184 contig00007, whole genome shotgun sequence (38722 bp)
Overview 1 RT 1: 22282-27462 bp Neighborhood of RT #1 [22282, 27545] PRK11139 HcaE RVT-GII GIIM DDE_Tnp_IS66_C Nudix_Hydrolase_27 Feature: gene Location: 22282-23265 bp Ori: KPM67088.1 Feature: domain Description: PRK11139 Location: 22324-23233 bp Feature: domain Description: PRK11139 Location: 2 2 32 4-2 32 33 bp Feature: gene Location: 23470-24705 bp Ori: KPM67089.1 Feature: domain Description: HcaE Location: 23530-24688 bp Feature: domain Description: HcaE Location: 2 3530-2 4688 bp Feature: gene Location: 25175-26596 bp Ori: KPM67100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25532-26147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5532 -2 6147 bp Feature: domain Description: GIIM Note: maturase Location: 26204-26429 bp Feature: domain Description: GIIM Note: maturase Location: 2 62 04-2 642 9 bp Feature: gene Location: 26829-26978 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 26850-26958 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 6850-2 6958 bp Feature: gene Location: 27012-27545 bp Ori: KPM67090.1 Feature: domain Description: Nudix_Hydrolase_27 Location: 27084-27462 bp Feature: domain Description: Nudix_Hydrolase_2 7 Location: 2 7084-2 7462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), HcaE (COG4638), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), Nudix_Hydrolase_27 (cd04686)

Seq: LKKT01000021.1 Pseudomonas putida strain HB4184 contig00021, whole genome shotgun sequence (65603 bp)
Overview 1 RT 1: 4384-8482 bp Neighborhood of RT #1 [4384, 8482] DUF1566 Avd_like RVT-DGRs Dcm Feature: gene Location: 4384-4956 bp Ori: KPM66100.1 Feature: domain Description: DUF1566 Location: 4714-4942 bp Feature: domain Description: DUF1566 Location: 4714-4942 bp Feature: gene Location: 5009-5362 bp Ori: KPM66101.1 Feature: domain Description: Avd_like Location: 5036-5342 bp Feature: domain Description: Avd_like Location: 503 6-53 42 bp Feature: gene Location: 5651-6718 bp Ori: KPM66163.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5810-6494 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5810-6494 bp Feature: gene Location: 6777-8066 bp Ori: KPM66102.1 Feature: domain Description: Dcm Location: 6783-8055 bp Feature: domain Description: Dcm Location: 6783 -8055 bp Feature: gene Location: 8075-8482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: LKKT01000094.1 Pseudomonas putida strain HB4184 contig00120, whole genome shotgun sequence (134134 bp)
Overview 1 RT 1: 128602-134134 bp Neighborhood of RT #1 [128602, 134134] umuC RVT-UG15 a_cpa1 Feature: gene Location: 128602-128904 bp Feature: gene Location: 128903-130183 bp Ori: KPM59849.1 Feature: domain Description: umuC Location: 128924-130169 bp Feature: domain Description: umuC Location: 128924 -130169 bp Feature: gene Location: 130239-131546 bp Ori: KPM59857.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 130344-130758 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 13034 4 -130758 bp Feature: gene Location: 132183-133829 bp Ori: KPM59850.1 Feature: domain Description: a_cpa1 Location: 132207-133815 bp Feature: domain Description: a_cpa1 Location: 132207-133815 bp Feature: gene Location: 133896-134134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), RVT-UG15, a_cpa1 (TIGR00831)

Seq: LKKT01000040.1 Pseudomonas putida strain HB4184 contig00042, whole genome shotgun sequence (49390 bp)
Overview 1 RT 1: 25289-32200 bp Neighborhood of RT #1 [25289, 32217] ALDH_F5_SSADH_GabD IS5 RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 25289-26734 bp Ori: KPM64736.1 Feature: domain Description: ALDH_F5_SSADH_GabD Location: 25373-26720 bp Feature: domain Description: ALDH_F5 _SSADH_GabD Location: 25 373-26720 bp Feature: gene Location: 27107-28087 bp Ori: KPM64737.1 Feature: domain Description: IS5 Location: 27296-28055 bp Feature: domain Description: IS5 Location: 27296-2805 5 bp Feature: gene Location: 28425-29825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29139-29751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29139-2975 1 bp Feature: gene Location: 30283-30618 bp Ori: KPM64738.1 Feature: domain Description: TnpB_IS66 Location: 30301-30589 bp Feature: domain Description: TnpB_IS66 Location: 30301-305 89 bp Feature: gene Location: 30682-32217 bp Ori: KPM64739.1 Feature: domain Description: LZ_Tnp_IS66 Location: 30823-31036 bp Feature: domain Description: LZ_Tnp_IS66 Location: 30823-31036 bp Feature: domain Description: zf-IS66 Location: 31057-31183 bp Feature: domain Description: zf-IS66 Location: 3105 7-31183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31225-32068 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31225 -32068 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 32089-32200 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 32089-32200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_F5_SSADH_GabD (cd07103), IS5 (COG3039), RVT-GII, TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)