myRT

myRT report for GCA_001307765.1_ASM130776v1

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Seq: CM003503.1 Aliiroseovarius crassostreae strain CV919-312 plasmid unnamed, complete sequence, whole genome shotgun sequence (18548 bp)
Overview 1 RT 1: 11474-17552 bp Neighborhood of RT #1 [11474, 17552] OtcD1_ARO-CYC_like HemN RVT-GII GIIM HTH_MARR Feature: gene Location: 11474-12187 bp Ori: KPN61556.1 Feature: domain Description: OtcD1_ARO-CYC_like Location: 11774-12152 bp Feature: domain Description: OtcD1 _ARO-CYC_like Location: 1 1 774-1 21 52 bp Feature: gene Location: 12192-13571 bp Ori: KPN61557.1 Feature: domain Description: HemN Location: 12288-13455 bp Feature: domain Description: HemN Location: 1 2288-1 3455 bp Feature: gene Location: 14603-15838 bp Ori: KPN61558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14804-15461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4804-1 5461 bp Feature: domain Description: GIIM Note: maturase Location: 15539-15770 bp Feature: domain Description: GIIM Note: maturase Location: 1 5539-1 5770 bp Feature: gene Location: 15923-16321 bp Ori: KPN61559.1 Feature: domain Description: HTH_MARR Location: 16001-16307 bp Feature: domain Description: HTH_MARR Location: 1 6001 -1 6307 bp Feature: gene Location: 16680-17552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OtcD1_ARO-CYC_like (cd08861), HemN (COG0635), RVT-GII, GIIM (pfam08388), HTH_MARR (smart00347)

Seq: LKBA01000006.1 Aliiroseovarius crassostreae strain CV919-312 Joined_contig_7, whole genome shotgun sequence (784730 bp)
Overview 1 RT 1: 678315-685022 bp Neighborhood of RT #1 [678315, 685022] HisA AcrB RVT-G2L4 Feature: gene Location: 678315-679058 bp Ori: KPN63670.1 Feature: domain Description: HisA Location: 678321-679014 bp Feature: domain Description: HisA Location: 67832 1-679014 bp Feature: gene Location: 679489-682536 bp Ori: KPN63671.1 Feature: domain Description: AcrB Location: 679615-682444 bp Feature: domain Description: AcrB Location: 679615-682 444 bp Feature: gene Location: 682533-683093 bp Ori: KPN63672.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 682539-682938 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 682 539-682 938 bp Feature: gene Location: 684571-684756 bp Feature: gene Location: 684828-685022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HisA (COG0106), AcrB (COG0841), RVT-G2L4