myRT

myRT report for GCA_001309485.1_ASM130948v1

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Seq: LDYI01000166.1 Escherichia coli strain AW1.3 91, whole genome shotgun sequence (23654 bp)
Overview 1 RT 1: 9926-16526 bp Neighborhood of RT #1 [9926, 16526] HupE_UreJ_2 RVT-GII umuC Feature: gene Location: 9926-10663 bp Feature: domain Description: HupE_UreJ_2 Location: 10112-10565 bp Feature: domain Description: HupE_UreJ_2 Location: 1 01 1 2-1 0565 bp Feature: gene Location: 10707-11072 bp Feature: gene Location: 11418-12902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11820-12510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 820-1 251 0 bp Feature: gene Location: 13804-15078 bp Feature: domain Description: umuC Location: 13807-15070 bp Feature: domain Description: umuC Location: 1 3807-1 5070 bp Feature: gene Location: 16203-16526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, umuC (PRK03609)

Seq: LDYI01000160.1 Escherichia coli strain AW1.3 110, whole genome shotgun sequence (17110 bp)
Overview 1 RT 1: 11917-17061 bp Neighborhood of RT #1 [11917, 17069] HupE_UreJ_2 RVT-GII umuC Feature: gene Location: 11917-12654 bp Feature: domain Description: HupE_UreJ_2 Location: 12103-12556 bp Feature: domain Description: HupE_UreJ_2 Location: 12 103-12 556 bp Feature: gene Location: 12698-13063 bp Feature: gene Location: 13409-14893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13811-14501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13811-14501 bp Feature: gene Location: 15795-17069 bp Feature: domain Description: umuC Location: 15798-17061 bp Feature: domain Description: umuC Location: 15798-17061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HupE_UreJ_2 (pfam13795), RVT-GII, umuC (PRK03609)

Seq: LDYI01000162.1 Escherichia coli strain AW1.3 183, whole genome shotgun sequence (77982 bp)
Overview 1 RT 1: 8522-14637 bp Neighborhood of RT #1 [8522, 14642] DUF2971 RVT-Retrons Q P Feature: gene Location: 8522-9640 bp Feature: domain Description: DUF2971 Location: 9029-9287 bp Feature: domain Description: DUF2971 Location: 9029-9287 bp Feature: gene Location: 9866-10771 bp Feature: gene Location: 10921-11895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11083-11635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11083 -1163 5 bp Feature: gene Location: 11911-12939 bp Feature: domain Description: Q Location: 11917-12934 bp Feature: domain Description: Q Location: 11917-1293 4 bp Feature: gene Location: 12939-14642 bp Feature: domain Description: P Location: 12954-14637 bp Feature: domain Description: P Location: 12954-1463 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535), DUF2971 (pfam11185)

Seq: LDYI01000118.1 Escherichia coli strain AW1.3 169, whole genome shotgun sequence (105412 bp)
Overview 1 RT 1: 88679-95389 bp Neighborhood of RT #1 [88679, 95487] PRK01749 umuC RVT-GII HupE_UreJ_2 Feature: gene Location: 88679-89209 bp Feature: domain Description: PRK01749 Location: 88682-89201 bp Feature: domain Description: PRK0174 9 Location: 88682-89201 bp Feature: gene Location: 90335-91609 bp Feature: domain Description: umuC Location: 90338-91601 bp Feature: domain Description: umuC Location: 90338-91601 bp Feature: gene Location: 92511-93995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92913-93603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92913-93603 bp Feature: gene Location: 94341-94706 bp Feature: gene Location: 94750-95487 bp Feature: domain Description: HupE_UreJ_2 Location: 94936-95389 bp Feature: domain Description: HupE_UreJ_2 Location: 94 936-95389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01749 (disulfide bond formation protein DsbB), umuC (PRK03609), RVT-GII, HupE_UreJ_2 (pfam13795)

Seq: LDYI01000073.1 Escherichia coli strain AW1.3 92, whole genome shotgun sequence (17109 bp)
Overview 1 RT 1: 42-5096 bp Neighborhood of RT #1 [42, 5194] umuC RVT-GII HupE_UreJ_2 Feature: gene Location: 42-1316 bp Feature: domain Description: umuC Location: 45-1308 bp Feature: domain Description: umuC Location: 45 -1308 bp Feature: gene Location: 2218-3702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-3310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620-3310 bp Feature: gene Location: 4048-4413 bp Feature: gene Location: 4457-5194 bp Feature: domain Description: HupE_UreJ_2 Location: 4643-5096 bp Feature: domain Description: HupE_UreJ_2 Location: 4643-5 096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, umuC (PRK03609)

Seq: LDYI01000046.1 Escherichia coli strain AW1.3 50, whole genome shotgun sequence (105881 bp)
Overview 1 RT 1: 92887-99002 bp Neighborhood of RT #1 [92887, 99007] DUF2971 RVT-Retrons Q P Feature: gene Location: 92887-94005 bp Feature: domain Description: DUF2971 Location: 93394-93652 bp Feature: domain Description: DUF2971 Location: 93394-936 52 bp Feature: gene Location: 94231-95136 bp Feature: gene Location: 95286-96260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95448-96000 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95448-96 000 bp Feature: gene Location: 96276-97304 bp Feature: domain Description: Q Location: 96282-97299 bp Feature: domain Description: Q Location: 96 282-97299 bp Feature: gene Location: 97304-99007 bp Feature: domain Description: P Location: 97319-99002 bp Feature: domain Description: P Location: 97319-99002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), RVT-Retrons, Q (PHA02536), P (PHA02535)