myRT

myRT report for GCA_001310895.1_ASM131089v1

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Seq: BAZS01000002.1 Virgibacillus halodenitrificans JCM 12304 DNA, contig: JCM12304.contig00002, whole genome shotgun sequence (257619 bp)
Overview 1 RT 1: 56735-61054 bp Neighborhood of RT #1 [56735, 61059] SPOR RadC RVT-GII Intron_maturas2 KOG4768 PRK00024 Feature: gene Location: 56735-57658 bp Feature: domain Description: SPOR Location: 57152-57338 bp Feature: domain Description: SPOR Location: 571 52-57338 bp Feature: gene Location: 57837-58406 bp Feature: domain Description: RadC Location: 57861-58386 bp Feature: domain Description: RadC Location: 57861 -58386 bp Feature: gene Location: 58951-60432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59221-60061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59221 -60061 bp Feature: domain Description: Intron_maturas2 Location: 60217-60418 bp Feature: domain Description: Intron_maturas2 Location: 6021 7-6041 8 bp Feature: gene Location: 60519-60839 bp Feature: domain Description: KOG4768 Location: 60573-60801 bp Feature: domain Description: KOG4768 Location: 60573-60801 bp Feature: gene Location: 60760-61059 bp Feature: domain Description: PRK00024 Location: 60922-61054 bp Feature: domain Description: PRK00024 Location: 60922-61 054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SPOR (pfam05036), RadC (pfam04002), RVT-GII, Intron_maturas2 (pfam01348), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), PRK00024 (DNA repair protein RadC)

Seq: BAZS01000023.1 Virgibacillus halodenitrificans JCM 12304 DNA, contig: JCM12304.contig00023, whole genome shotgun sequence (69719 bp)
Overview 1 RT 1: 2-4345 bp Neighborhood of RT #1 [2, 4350] RVT_N RVT-GII GIIM HNHc YktD Feature: gene Location: 2-166 bp Feature: gene Location: 931-1170 bp Feature: gene Location: 1429-3192 bp Feature: RT Description: RVT_N Location: 1474-1720 bp Feature: RT Description: RVT_N Location: 1474-172 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1777-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1777-2 42 8 bp Feature: domain Description: GIIM Note: maturase Location: 2491-2725 bp Feature: domain Description: GIIM Note: maturase Location: 2 491-2 72 5 bp Feature: domain Description: HNHc Note: nucleases Location: 2926-3097 bp Feature: domain Description: HNHc Note: nucleases Location: 2 92 6-3097 bp Feature: gene Location: 3212-3424 bp Feature: gene Location: 3433-4350 bp Feature: domain Description: YktD Location: 3436-4345 bp Feature: domain Description: YktD Location: 3436-4345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), YktD (COG3315)