myRT

myRT report for GCA_001311685.1_ASM131168v1

Download annotations/find similar RTs

Seq: BBBS01000020.1 Lactobacillus crispatus DSM 20584 = JCM 1185 DNA, contig: JCM1185.contig00020, whole genome shotgun sequence (31586 bp)
Overview 1 RT 1: 1082-4200 bp Neighborhood of RT #1 [1082, 4205] SunT MdlB RVT-GII PBP1_Qymf_like Feature: gene Location: 1082-1576 bp Feature: domain Description: SunT Location: 1100-1568 bp Feature: domain Description: SunT Location: 1 1 00-1 568 bp Feature: gene Location: 1579-2019 bp Feature: domain Description: MdlB Location: 1621-2011 bp Feature: domain Description: MdlB Location: 1 621 -201 1 bp Feature: gene Location: 2626-3564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2827-3445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2827-3445 bp Feature: gene Location: 3635-3856 bp Feature: gene Location: 3993-4205 bp Feature: domain Description: PBP1_Qymf_like Location: 3999-4200 bp Feature: domain Description: PBP1 _Qymf_like Location: 3999-4200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SunT (COG2274), MdlB (COG1132), RVT-GII, PBP1_Qymf_like

Seq: BBBS01000033.1 Lactobacillus crispatus DSM 20584 = JCM 1185 DNA, contig: JCM1185.contig00033, whole genome shotgun sequence (23150 bp)
Overview 1 RT 1: 17795-20623 bp Neighborhood of RT #1 [17795, 20625] DUF3100 RVT-GII GIIM PurR Feature: gene Location: 17795-18064 bp Feature: domain Description: DUF3100 Location: 17810-18008 bp Feature: domain Description: DUF3100 Location: 17810-18008 bp Feature: gene Location: 18150-18383 bp Feature: gene Location: 18690-19121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18699-18891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18699-18891 bp Feature: domain Description: GIIM Note: maturase Location: 18945-19116 bp Feature: domain Description: GIIM Note: maturase Location: 18945-19116 bp Feature: gene Location: 19239-19367 bp Feature: gene Location: 19711-20625 bp Feature: domain Description: PurR Location: 19729-20623 bp Feature: domain Description: PurR Location: 1972 9-2 062 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3100 (pfam11299), RVT-GII, GIIM (pfam08388), PurR (COG1609)

Seq: BBBS01000035.1 Lactobacillus crispatus DSM 20584 = JCM 1185 DNA, contig: JCM1185.contig00035, whole genome shotgun sequence (20212 bp)
Overview 1 RT 1: 13472-17407 bp Neighborhood of RT #1 [13472, 17421] Tra8 RVT-GII ribH PRK09311 Feature: gene Location: 13472-14083 bp Feature: domain Description: Tra8 Location: 13502-13967 bp Feature: domain Description: Tra8 Location: 13 502-13 967 bp Feature: gene Location: 14102-14353 bp Feature: gene Location: 15264-15488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15267-15345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15267-153 45 bp Feature: gene Location: 15763-16227 bp Feature: domain Description: ribH Location: 15766-16222 bp Feature: domain Description: ribH Location: 15766-16222 bp Feature: gene Location: 16309-17421 bp Feature: domain Description: PRK09311 Location: 16318-17407 bp Feature: domain Description: PRK093 11 Location: 163 18-17407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII, ribH (PRK00061), PRK09311 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II)