myRT

myRT report for GCA_001312505.1_ASM131250v1

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Seq: BBDW01000001.1 Ruminococcus faecis JCM 15917 DNA, contig: JCM15917.contig00001, whole genome shotgun sequence (559461 bp)
Overview 1 RT 1: 109574-112598 bp Neighborhood of RT #1 [109574, 112606] RVT-DGRs Phage_XkdX Feature: gene Location: 109574-110653 bp Feature: gene Location: 110759-110896 bp Feature: gene Location: 111052-112218 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111256-111952 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 1 256-1 1 1 952 bp Feature: gene Location: 112244-112441 bp Feature: gene Location: 112457-112606 bp Feature: domain Description: Phage_XkdX Location: 112463-112598 bp Feature: domain Description: Phage_XkdX Location: 1 1 2463-1 1 2598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: BBDW01000013.1 Ruminococcus faecis JCM 15917 DNA, contig: JCM15917.contig00013, whole genome shotgun sequence (103271 bp)
Overview 1 RT 1: 50877-56336 bp Neighborhood of RT #1 [50877, 56338] Glyco_hydro_2_N PRK10296 HTH_18 RVT-GII GIIM YjiL HgdB Feature: gene Location: 50877-51338 bp Feature: domain Description: Glyco_hydro_2_N Location: 51006-51306 bp Feature: domain Description: Glyco_hydro_2 _N Location: 51006-51306 bp Feature: gene Location: 51588-52634 bp Feature: domain Description: PRK10296 Location: 51756-51975 bp Feature: domain Description: PRK102 96 Location: 51756-51975 bp Feature: domain Description: HTH_18 Location: 52392-52620 bp Feature: domain Description: HTH_18 Location: 52 392 -52 62 0 bp Feature: gene Location: 53276-54688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53627-54248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5362 7-542 48 bp Feature: domain Description: GIIM Note: maturase Location: 54299-54509 bp Feature: domain Description: GIIM Note: maturase Location: 542 99-54509 bp Feature: gene Location: 54773-55549 bp Feature: domain Description: YjiL Location: 54779-55544 bp Feature: domain Description: YjiL Location: 54779-55544 bp Feature: gene Location: 55742-56338 bp Feature: domain Description: HgdB Location: 55745-56336 bp Feature: domain Description: HgdB Location: 55745-56336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_2_N (pfam02837), PRK10296 (DNA-binding transcriptional regulator ChbR; Provisional), HTH_18 (pfam12833), RVT-GII, GIIM (pfam08388), YjiL (COG1924), HgdB (COG1775)

Seq: BBDW01000029.1 Ruminococcus faecis JCM 15917 DNA, contig: JCM15917.contig00029, whole genome shotgun sequence (2459 bp)
Overview 1 RT 1: 305-2354 bp Neighborhood of RT #1 [305, 2398] RVT-GII eMpr Feature: gene Location: 305-475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311-416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 11-416 bp Feature: gene Location: 755-1666 bp Feature: gene Location: 1811-2398 bp Feature: domain Description: eMpr Location: 1961-2354 bp Feature: domain Description: eMpr Location: 1961-23 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, eMpr (COG3591)