myRT

myRT report for GCA_001312925.1_ASM131292v1

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Seq: BBEW01000015.1 Rhodococcus sp. HA99 DNA, contig: JCM9789.contig00015, whole genome shotgun sequence (24008 bp)
Overview 1 RT 1: 6860-12284 bp Neighborhood of RT #1 [6860, 12334] HATPase_c_3 RVT-UG22 HEAT_2 Acetyltransf_1 Feature: gene Location: 6860-8980 bp Feature: domain Description: HATPase_c_3 Location: 7064-7358 bp Feature: domain Description: HATPase_c_3 Location: 7064-7358 bp Feature: gene Location: 9307-9846 bp Feature: gene Location: 9909-11429 bp Feature: RT Description: RVT-UG22 Note: UG22 RT Location: 10101-10623 bp Feature: RT Description: RVT-UG22 Note: UG22 RT Location: 1 01 01 -1 0623 bp Feature: domain Description: HEAT_2 Location: 11121-11349 bp Feature: domain Description: HEAT_2 Location: 1 1 1 21 -1 1 349 bp Feature: gene Location: 11456-11842 bp Feature: gene Location: 11987-12334 bp Feature: domain Description: Acetyltransf_1 Location: 12026-12284 bp Feature: domain Description: Acetyltransf_1 Location: 1 2026-1 2284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG22, HEAT_2 (pfam13646), Acetyltransf_1 (pfam00583)

Seq: BBEW01000053.1 Rhodococcus sp. HA99 DNA, contig: JCM9789.contig00053, whole genome shotgun sequence (16460 bp)
Overview 1 RT 1: 2-3168 bp Neighborhood of RT #1 [2, 3260] DUF1648 RVT-Retrons PRK00228 PRK00228 Feature: gene Location: 2-163 bp Feature: gene Location: 179-1102 bp Feature: domain Description: DUF1648 Location: 209-344 bp Feature: domain Description: DUF1648 Location: 2 09-344 bp Feature: gene Location: 1360-2550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1795-2398 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1795-2 398 bp Feature: gene Location: 2653-2910 bp Feature: domain Description: PRK00228 Location: 2698-2896 bp Feature: domain Description: PRK002 2 8 Location: 2 698-2 896 bp Feature: gene Location: 2940-3260 bp Feature: domain Description: PRK00228 Location: 2982-3168 bp Feature: domain Description: PRK002 2 8 Location: 2 982 -3168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1648 (pfam07853), RVT-Retrons, PRK00228 (YqgE/AlgH family protein)

Seq: BBEW01000541.1 Rhodococcus sp. HA99 DNA, contig: JCM9789.contig00541, whole genome shotgun sequence (3492 bp)
Overview 1 RT 1: 1-3374 bp Neighborhood of RT #1 [1, 3388] RES InsE RVT-GII GIIM PHA02517 Feature: gene Location: 1-324 bp Feature: domain Description: RES Location: 7-277 bp Feature: domain Description: RES Location: 7-277 bp Feature: gene Location: 400-765 bp Feature: domain Description: InsE Location: 409-754 bp Feature: domain Description: InsE Location: 409-754 bp Feature: gene Location: 1354-2613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1570-2230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1570-223 0 bp Feature: domain Description: GIIM Note: maturase Location: 2314-2524 bp Feature: domain Description: GIIM Note: maturase Location: 23 14-2524 bp Feature: gene Location: 2678-3388 bp Feature: domain Description: PHA02517 Location: 2765-3374 bp Feature: domain Description: PHA02517 Location: 2765-3 3 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RES (smart00953), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)