myRT

myRT report for GCA_001313125.1_ASM131312v1

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Seq: BBFG01000009.1 Verrucomicrobium spinosum DSM 4136 = JCM 18804 DNA, contig: JCM18804.contig00009, whole genome shotgun sequence (111096 bp)
Overview 1 RT 1: 8296-12228 bp Neighborhood of RT #1 [8296, 12228] Phage_int_SAM_1 INT_Rci_Hp1_C RVT-UG2 RVT-UG2 SRAP Feature: gene Location: 8296-8877 bp Feature: domain Description: Phage_int_SAM_1 Location: 8683-8845 bp Feature: domain Description: Phage_int_SAM_1 Location: 8683-8845 bp Feature: gene Location: 8940-9551 bp Feature: domain Description: INT_Rci_Hp1_C Location: 8952-9492 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 8952-9492 bp Feature: gene Location: 10085-10624 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 10130-10613 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 01 30-1 061 3 bp Feature: gene Location: 10645-11277 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 10651-10948 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 0651 -1 0948 bp Feature: gene Location: 11335-11928 bp Feature: domain Description: SRAP Location: 11341-11917 bp Feature: domain Description: SRAP Location: 1 1 341 -1 1 91 7 bp Feature: gene Location: 12040-12228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_Rci_Hp1_C (cd00796), RVT-UG2, SRAP (pfam02586)

Seq: BBFG01000155.1 Verrucomicrobium spinosum DSM 4136 = JCM 18804 DNA, contig: JCM18804.contig00155, whole genome shotgun sequence (14921 bp)
Overview 1 RT 1: 7586-12774 bp Neighborhood of RT #1 [7586, 12788] group_II_RT_mat RVT-GII TlyC TIGR03943 TIGR03943 Feature: gene Location: 7586-7777 bp Feature: gene Location: 7838-8263 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7856-8126 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7856-812 6 bp Feature: gene Location: 8295-8957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8397-8943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8397-8943 bp Feature: gene Location: 9891-11207 bp Feature: domain Description: TlyC Location: 9903-11187 bp Feature: domain Description: TlyC Location: 9903-11187 bp Feature: gene Location: 11394-12788 bp Feature: domain Description: TIGR03943 Location: 11478-11664 bp Feature: domain Description: TIGR03943 Location: 11478-11664 bp Feature: domain Description: TIGR03943 Location: 12000-12774 bp Feature: domain Description: TIGR03943 Location: 12 000-12 774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, TlyC (COG1253), TIGR03943 (TIGR03943 family protein)

Seq: BBFG01000376.1 Verrucomicrobium spinosum DSM 4136 = JCM 18804 DNA, contig: JCM18804.contig00376, whole genome shotgun sequence (1842 bp)
Overview 1 RT 1: 2-1697 bp Neighborhood of RT #1 [2, 1697] RVT-GII GIIM Feature: gene Location: 2-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317-983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 17-983 bp Feature: domain Description: GIIM Note: maturase Location: 1052-1259 bp Feature: domain Description: GIIM Note: maturase Location: 1052-1259 bp Feature: gene Location: 1536-1697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)