myRT

myRT report for GCA_001313285.1_ASM131328v1

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Seq: BBFO01000014.1 Rhodococcus imtechensis RKJ300 = JCM 13270 DNA, contig: JCM13270.contig00014, whole genome shotgun sequence (20216 bp)
Overview 1 RT 1: 8519-15030 bp Neighborhood of RT #1 [8519, 15030] RVT-GII PHA02517 INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM Feature: gene Location: 8519-8749 bp Feature: gene Location: 9008-9148 bp Feature: gene Location: 9186-10256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9711-10089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971 1 -1 0089 bp Feature: gene Location: 10343-10705 bp Feature: gene Location: 11051-11971 bp Feature: domain Description: PHA02517 Location: 11138-11936 bp Feature: domain Description: PHA0251 7 Location: 1 1 1 38-1 1 936 bp Feature: gene Location: 12055-12561 bp Feature: domain Description: INT_RitB_C_like Location: 12205-12499 bp Feature: domain Description: INT_RitB_C_like Location: 1 2205-1 2499 bp Feature: gene Location: 12551-13648 bp Feature: domain Description: Phage_int_SAM_1 Location: 12596-12845 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 2596-1 2845 bp Feature: domain Description: INT_RitC_C_like Location: 12926-13475 bp Feature: domain Description: INT_RitC_C_like Location: 1 2926-1 3475 bp Feature: gene Location: 13869-14288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13875-13956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3875-1 3956 bp Feature: domain Description: GIIM Note: maturase Location: 14031-14229 bp Feature: domain Description: GIIM Note: maturase Location: 1 4031 -1 4229 bp Feature: gene Location: 14337-14795 bp Feature: gene Location: 14860-15030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), GIIM (pfam08388)

Seq: BBFO01000205.1 Rhodococcus imtechensis RKJ300 = JCM 13270 DNA, contig: JCM13270.contig00205, whole genome shotgun sequence (6286 bp)
Overview 1 RT 1: 115-3006 bp Neighborhood of RT #1 [115, 3050] RVT-GII GIIM RVT-GII recomb_XerD INT_tnpA_C_Tn554 INT_tnpA_C_Tn554 Feature: gene Location: 115-915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130-469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130-469 bp Feature: domain Description: GIIM Note: maturase Location: 544-760 bp Feature: domain Description: GIIM Note: maturase Location: 544-760 bp Feature: gene Location: 927-1559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1242-1542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 42 -1542 bp Feature: gene Location: 1730-2713 bp Feature: domain Description: recomb_XerD Location: 2036-2327 bp Feature: domain Description: recomb_XerD Location: 2 036-2 32 7 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 2465-2708 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 2 465-2 708 bp Feature: gene Location: 2760-3050 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 2766-3006 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 2 766-3006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), recomb_XerD (TIGR02225), INT_tnpA_C_Tn554 (cd01186)

Seq: BBFO01000447.1 Rhodococcus imtechensis RKJ300 = JCM 13270 DNA, contig: JCM13270.contig00447, whole genome shotgun sequence (4127 bp)
Overview 1 RT 1: 172-2808 bp Neighborhood of RT #1 [172, 2867] RVT-GII GIIM Tra8 DUF4189 Feature: gene Location: 172-645 bp Feature: gene Location: 811-1692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814-1099 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1390 bp Feature: domain Description: GIIM Note: maturase Location: 1174-13 90 bp Feature: gene Location: 1924-2151 bp Feature: domain Description: Tra8 Location: 1969-2086 bp Feature: domain Description: Tra8 Location: 1969-2086 bp Feature: gene Location: 2406-2867 bp Feature: domain Description: DUF4189 Location: 2538-2808 bp Feature: domain Description: DUF4189 Location: 253 8-2808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra8 (COG2826), DUF4189 (pfam13827)