myRT

myRT report for GCA_001315745.1_ASM131574v1

Download annotations/find similar RTs

Seq: BBIH01000007.1 Bacteroides coprophilus JCM 13816 DNA, contig: JCM13816.contig00007, whole genome shotgun sequence (85969 bp)
Overview 1 RT 1: 74303-77519 bp Neighborhood of RT #1 [74303, 77519] RVT-UG27 Feature: gene Location: 74303-74545 bp Feature: gene Location: 74619-74885 bp Feature: gene Location: 74935-76197 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 75127-75763 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 751 27-75763 bp Feature: gene Location: 76190-76858 bp Feature: gene Location: 76872-77519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: BBIH01000028.1 Bacteroides coprophilus JCM 13816 DNA, contig: JCM13816.contig00028, whole genome shotgun sequence (52061 bp)
Overview 1 RT 1: 6328-13500 bp Neighborhood of RT #1 [6328, 14117] RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 6328-6531 bp Feature: gene Location: 6669-7802 bp Feature: gene Location: 7756-9423 bp Feature: domain Description: RVT_N Location: 7810-8053 bp Feature: domain Description: RVT_N Location: 7810-8053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8098-8746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8098-8746 bp Feature: domain Description: GIIM Note: maturase Location: 8800-9031 bp Feature: domain Description: GIIM Note: maturase Location: 8800-9031 bp Feature: gene Location: 9438-9719 bp Feature: gene Location: 10080-14117 bp Feature: domain Description: N6_Mtase Location: 10608-11034 bp Feature: domain Description: N6_Mtase Location: 10608-11034 bp Feature: domain Description: COG4646 Location: 11535-13500 bp Feature: domain Description: COG4646 Location: 11535-13500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: BBIH01000040.1 Bacteroides coprophilus JCM 13816 DNA, contig: JCM13816.contig00040, whole genome shotgun sequence (41099 bp)
Overview 1 RT 1: 15896-20024 bp Neighborhood of RT #1 [15896, 20317] YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 15896-16555 bp Feature: domain Description: YWFCY Location: 15905-16082 bp Feature: domain Description: YWFCY Location: 15905-16082 bp Feature: gene Location: 16670-16819 bp Feature: gene Location: 17456-18562 bp Feature: domain Description: RVT_N Location: 17510-17753 bp Feature: domain Description: RVT_N Location: 17510-17753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17798-18446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17798-18446 bp Feature: gene Location: 18541-19107 bp Feature: domain Description: GIIM Note: maturase Location: 18550-18730 bp Feature: domain Description: GIIM Note: maturase Location: 18550-1873 0 bp Feature: gene Location: 19112-20317 bp Feature: domain Description: TraG-D_C Location: 19694-20024 bp Feature: domain Description: TraG-D_C Location: 19694-20024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: BBIH01000058.1 Bacteroides coprophilus JCM 13816 DNA, contig: JCM13816.contig00058, whole genome shotgun sequence (21898 bp)
Overview 1 RT 1: 15076-21897 bp Neighborhood of RT #1 [15076, 21897] Mod T3RM_EcoP15I_C PRK15483 RVT-UG3 Feature: gene Location: 15076-16908 bp Feature: domain Description: Mod Location: 15172-16315 bp Feature: domain Description: Mod Location: 15172-16315 bp Feature: domain Description: T3RM_EcoP15I_C Location: 16663-16897 bp Feature: domain Description: T3RM_EcoP15I_C Location: 16663-16897 bp Feature: gene Location: 16978-19923 bp Feature: domain Description: PRK15483 Location: 16981-19879 bp Feature: domain Description: PRK154 83 Location: 16981-19879 bp Feature: gene Location: 20111-21541 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 20561-21080 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 20561-21080 bp Feature: gene Location: 21538-21897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mod (COG2189), T3RM_EcoP15I_C (pfam18273), PRK15483 (type III restriction-modification system endonuclease), RVT-UG3

Seq: BBIH01000066.1 Bacteroides coprophilus JCM 13816 DNA, contig: JCM13816.contig00066, whole genome shotgun sequence (18095 bp)
Overview 1 RT 1: 14544-16952 bp Neighborhood of RT #1 [14544, 18094] Mob_Pre APG17 RVT-UG8 Feature: gene Location: 14544-14738 bp Feature: gene Location: 14768-16093 bp Feature: domain Description: Mob_Pre Location: 14954-15242 bp Feature: domain Description: Mob_Pre Location: 1495 4-15 242 bp Feature: domain Description: APG17 Location: 15248-15542 bp Feature: domain Description: APG17 Location: 15 248-15 5 42 bp Feature: gene Location: 16253-18094 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16502-16952 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 165 02-1695 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), APG17 (pfam04108), RVT-UG8

Seq: BBIH01000124.1 Bacteroides coprophilus JCM 13816 DNA, contig: JCM13816.contig00124, whole genome shotgun sequence (1610 bp)
Overview 1 RT 1: 2-1609 bp Neighborhood of RT #1 [2, 1609] RVT-GII GIIM Feature: gene Location: 2-1228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-96 2 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1220 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1220 bp Feature: gene Location: 1469-1609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)