myRT

myRT report for GCA_001315765.1_ASM131576v1

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Seq: BBII01000025.1 Bacteroides coprophilus JCM 13817 DNA, contig: JCM13817.contig00025, whole genome shotgun sequence (52062 bp)
Overview 1 RT 1: 37949-45736 bp Neighborhood of RT #1 [37949, 45736] N6_Mtase COG4646 RVT_N RVT-GII GIIM Feature: gene Location: 37949-41986 bp Feature: domain Description: N6_Mtase Location: 38477-38903 bp Feature: domain Description: N6_Mtase Location: 38477-38903 bp Feature: domain Description: COG4646 Location: 39404-41369 bp Feature: domain Description: COG4646 Location: 39404-41 369 bp Feature: gene Location: 42179-42403 bp Feature: gene Location: 42641-44308 bp Feature: domain Description: RVT_N Location: 42695-42938 bp Feature: domain Description: RVT_N Location: 42695-42938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42983-43631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42983-43631 bp Feature: domain Description: GIIM Note: maturase Location: 43685-43916 bp Feature: domain Description: GIIM Note: maturase Location: 43685-4391 6 bp Feature: gene Location: 44262-45395 bp Feature: gene Location: 45533-45736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BBII01000027.1 Bacteroides coprophilus JCM 13817 DNA, contig: JCM13817.contig00027, whole genome shotgun sequence (51341 bp)
Overview 1 RT 1: 39679-42893 bp Neighborhood of RT #1 [39679, 42893] RVT-UG27 Feature: gene Location: 39679-39921 bp Feature: gene Location: 39987-40133 bp Feature: gene Location: 40309-41571 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 40501-41137 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 40501-41137 bp Feature: gene Location: 41564-42232 bp Feature: gene Location: 42246-42893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: BBII01000036.1 Bacteroides coprophilus JCM 13817 DNA, contig: JCM13817.contig00036, whole genome shotgun sequence (41101 bp)
Overview 1 RT 1: 19585-24112 bp Neighborhood of RT #1 [19585, 24112] RimL TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 19585-20730 bp Feature: domain Description: RimL Location: 20221-20716 bp Feature: domain Description: RimL Location: 20221-20716 bp Feature: gene Location: 20784-21989 bp Feature: domain Description: TraG-D_C Location: 21366-21696 bp Feature: domain Description: TraG-D_C Location: 213 66-21696 bp Feature: gene Location: 21994-23646 bp Feature: domain Description: RVT_N Location: 22048-22291 bp Feature: domain Description: RVT_N Location: 22048-22291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22336-22984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 3 6-22984 bp Feature: domain Description: GIIM Note: maturase Location: 23038-23269 bp Feature: domain Description: GIIM Note: maturase Location: 23 03 8-23 269 bp Feature: gene Location: 23753-23917 bp Feature: gene Location: 23963-24112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BBII01000060.1 Bacteroides coprophilus JCM 13817 DNA, contig: JCM13817.contig00060, whole genome shotgun sequence (21901 bp)
Overview 1 RT 1: 16978-21900 bp Neighborhood of RT #1 [16978, 21900] PRK15483 PRK15483 RVT-UG3 Feature: gene Location: 16978-19185 bp Feature: domain Description: PRK15483 Location: 16981-19153 bp Feature: domain Description: PRK154 83 Location: 16981-19153 bp Feature: gene Location: 19206-19943 bp Feature: domain Description: PRK15483 Location: 19236-19938 bp Feature: domain Description: PRK154 83 Location: 19236-19938 bp Feature: gene Location: 20111-21541 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 20561-21080 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 20561-21080 bp Feature: gene Location: 21538-21900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15483 (type III restriction-modification system endonuclease), RVT-UG3

Seq: BBII01000068.1 Bacteroides coprophilus JCM 13817 DNA, contig: JCM13817.contig00068, whole genome shotgun sequence (18077 bp)
Overview 1 RT 1: 13350-16932 bp Neighborhood of RT #1 [13350, 18074] Mob_Pre APG17 RVT-UG8 Feature: gene Location: 13350-14378 bp Feature: gene Location: 14529-16079 bp Feature: domain Description: Mob_Pre Location: 14940-15228 bp Feature: domain Description: Mob_Pre Location: 14940-15 228 bp Feature: domain Description: APG17 Location: 15234-15528 bp Feature: domain Description: APG17 Location: 15 234-15 5 28 bp Feature: gene Location: 16239-18074 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16482-16932 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16482-16932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), APG17 (pfam04108), RVT-UG8

Seq: BBII01000136.1 Bacteroides coprophilus JCM 13817 DNA, contig: JCM13817.contig00136, whole genome shotgun sequence (1288 bp)
Overview 1 RT 1: 3-954 bp Neighborhood of RT #1 [3, 953] RVT-GII Feature: gene Location: 3-953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345-954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345-954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII