myRT

myRT report for GCA_001315785.1_ASM131578v1

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Seq: BBIJ01000008.1 Bacteroides coprophilus DSM 18228 = JCM 13818 DNA, contig: JCM13818.contig00008, whole genome shotgun sequence (85973 bp)
Overview 1 RT 1: 74310-77524 bp Neighborhood of RT #1 [74310, 77524] RVT-UG27 RVT-UG27 Feature: gene Location: 74310-74552 bp Feature: gene Location: 74618-74764 bp Feature: gene Location: 74941-75645 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 74944-75211 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 74944-7521 1 bp Feature: gene Location: 75702-76202 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 75894-76200 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 75894-76200 bp Feature: gene Location: 76195-76863 bp Feature: gene Location: 76877-77524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: BBIJ01000030.1 Bacteroides coprophilus DSM 18228 = JCM 13818 DNA, contig: JCM13818.contig00030, whole genome shotgun sequence (52120 bp)
Overview 1 RT 1: 6330-13502 bp Neighborhood of RT #1 [6330, 14119] RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 6330-6533 bp Feature: gene Location: 6671-7804 bp Feature: gene Location: 7758-9425 bp Feature: domain Description: RVT_N Location: 7812-8055 bp Feature: domain Description: RVT_N Location: 7812 -8055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8100-8748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8100-8748 bp Feature: domain Description: GIIM Note: maturase Location: 8802-9033 bp Feature: domain Description: GIIM Note: maturase Location: 8802 -9033 bp Feature: gene Location: 9440-9721 bp Feature: gene Location: 10082-14119 bp Feature: domain Description: N6_Mtase Location: 10610-11036 bp Feature: domain Description: N6_Mtase Location: 10610-11036 bp Feature: domain Description: COG4646 Location: 11537-13502 bp Feature: domain Description: COG4646 Location: 11537-13502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: BBIJ01000037.1 Bacteroides coprophilus DSM 18228 = JCM 13818 DNA, contig: JCM13818.contig00037, whole genome shotgun sequence (41096 bp)
Overview 1 RT 1: 19581-24108 bp Neighborhood of RT #1 [19581, 24108] RimL TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 19581-20726 bp Feature: domain Description: RimL Location: 20217-20712 bp Feature: domain Description: RimL Location: 20217-20712 bp Feature: gene Location: 20780-21985 bp Feature: domain Description: TraG-D_C Location: 21362-21692 bp Feature: domain Description: TraG-D_C Location: 213 62-21692 bp Feature: gene Location: 21990-23642 bp Feature: domain Description: RVT_N Location: 22044-22287 bp Feature: domain Description: RVT_N Location: 22044-22287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22332-22980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 3 2-22980 bp Feature: domain Description: GIIM Note: maturase Location: 23034-23265 bp Feature: domain Description: GIIM Note: maturase Location: 23 03 4-23 265 bp Feature: gene Location: 23749-23913 bp Feature: gene Location: 23959-24108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BBIJ01000057.1 Bacteroides coprophilus DSM 18228 = JCM 13818 DNA, contig: JCM13818.contig00057, whole genome shotgun sequence (21899 bp)
Overview 1 RT 1: 3-4833 bp Neighborhood of RT #1 [3, 4898] RVT-UG3 PRK15483 PRK15483 Feature: gene Location: 3-362 bp Feature: gene Location: 359-1789 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 809-1328 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 809-1328 bp Feature: gene Location: 1957-3369 bp Feature: domain Description: PRK15483 Location: 1963-3364 bp Feature: domain Description: PRK154 83 Location: 1963-3364 bp Feature: gene Location: 3420-4898 bp Feature: domain Description: PRK15483 Location: 3423-4833 bp Feature: domain Description: PRK154 83 Location: 34 23-4 833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, PRK15483 (type III restriction-modification system endonuclease)

Seq: BBIJ01000068.1 Bacteroides coprophilus DSM 18228 = JCM 13818 DNA, contig: JCM13818.contig00068, whole genome shotgun sequence (18081 bp)
Overview 1 RT 1: 14760-16937 bp Neighborhood of RT #1 [14760, 18079] Mob_Pre RVT-UG8 Feature: gene Location: 14760-15326 bp Feature: domain Description: Mob_Pre Location: 14946-15222 bp Feature: domain Description: Mob_Pre Location: 14946-15 222 bp Feature: gene Location: 15323-16084 bp Feature: gene Location: 16244-18079 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16487-16937 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16487-16937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), RVT-UG8

Seq: BBIJ01000140.1 Bacteroides coprophilus DSM 18228 = JCM 13818 DNA, contig: JCM13818.contig00140, whole genome shotgun sequence (1316 bp)
Overview 1 RT 1: 336-1296 bp Neighborhood of RT #1 [336, 1313] RVT-GII Feature: gene Location: 336-1313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678-1296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 78-1296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII