myRT

myRT report for GCA_001316305.1_ASM131630v1

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Seq: BBEF01000007.1 Methanosarcina barkeri JCM 10043 DNA, contig: JCM10043.contig00007, whole genome shotgun sequence (71687 bp)
Overview 1 RT 1: 2387-6462 bp Neighborhood of RT #1 [2387, 6470] RVT-CRISPR group_II_RT_mat Cas6b_N Cas6b_C Feature: gene Location: 2387-2638 bp Feature: gene Location: 3345-3725 bp Feature: gene Location: 4561-5076 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4741-5065 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4741 -5065 bp Feature: gene Location: 5310-5657 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5316-5646 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 531 6-5646 bp Feature: gene Location: 5796-6470 bp Feature: domain Description: Cas6b_N Location: 5817-6117 bp Feature: domain Description: Cas6b_N Location: 581 7-61 1 7 bp Feature: domain Description: Cas6b_C Location: 6129-6462 bp Feature: domain Description: Cas6b_C Location: 61 29-6462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, group_II_RT_mat (TIGR04416), Cas6b_N (pfam17955), Cas6b_C

Seq: BBEF01000039.1 Methanosarcina barkeri JCM 10043 DNA, contig: JCM10043.contig00039, whole genome shotgun sequence (35908 bp)
Overview 1 RT 1: 24863-27120 bp Neighborhood of RT #1 [24863, 27120] RVT-UG7 Feature: gene Location: 24863-25045 bp Feature: gene Location: 25469-26092 bp Feature: gene Location: 26082-26291 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 26088-26262 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 6088-2 62 62 bp Feature: gene Location: 26348-26641 bp Feature: gene Location: 26662-27120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7

Seq: BBEF01000060.1 Methanosarcina barkeri JCM 10043 DNA, contig: JCM10043.contig00060, whole genome shotgun sequence (26226 bp)
Overview 1 RT 1: 10289-14388 bp Neighborhood of RT #1 [10289, 14388] DDE_Tnp_ISAZ013 GIIM RVT_N RVT-GII DnaC Feature: gene Location: 10289-10708 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 10340-10658 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 103 40-10658 bp Feature: gene Location: 10923-11444 bp Feature: domain Description: GIIM Note: maturase Location: 10929-11040 bp Feature: domain Description: GIIM Note: maturase Location: 10929-11040 bp Feature: gene Location: 11548-12717 bp Feature: domain Description: RVT_N Location: 11704-11944 bp Feature: domain Description: RVT_N Location: 11704-11944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11992-12652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11992-12652 bp Feature: gene Location: 13242-13937 bp Feature: domain Description: DnaC Location: 13245-13926 bp Feature: domain Description: DnaC Location: 13 245-13 926 bp Feature: gene Location: 14062-14388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISAZ013 (pfam07592), GIIM (pfam08388), RVT_N (pfam13655), RVT-GII, DnaC (COG1484)

Seq: BBEF01000063.1 Methanosarcina barkeri JCM 10043 DNA, contig: JCM10043.contig00063, whole genome shotgun sequence (24363 bp)
Overview 1 RT 1: 11787-15206 bp Neighborhood of RT #1 [11787, 15220] RVT_N RVT-GII DppF Feature: gene Location: 11787-11975 bp Feature: gene Location: 12342-12554 bp Feature: gene Location: 13256-14071 bp Feature: domain Description: RVT_N Location: 13346-13589 bp Feature: domain Description: RVT_N Location: 1334 6-13589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13634-14060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13634 -14 060 bp Feature: gene Location: 14165-14503 bp Feature: gene Location: 15065-15220 bp Feature: domain Description: DppF Location: 15068-15206 bp Feature: domain Description: DppF Location: 15068-15206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, DppF (COG1124)