myRT

myRT report for GCA_001316745.2_18_S10v02

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Seq: LJEE02000024.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:945169659 contig12, whole genome shotgun sequence (1015 bp)
Overview 1 RT 1: 1-1007 bp Neighborhood of RT #1 [1, 1007] RVT-Retrons Feature: gene Location: 1-629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 181-625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 81 -625 bp Feature: gene Location: 744-1007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LJEE02000138.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:945169659 contig88, whole genome shotgun sequence (42313 bp)
Overview 1 RT 1: 11950-16697 bp Neighborhood of RT #1 [11950, 16702] COG3499 D RVT-UG11 SmpB PRK10724 Feature: gene Location: 11950-12435 bp Ori: OCN59992.1 Feature: domain Description: COG3499 Location: 11953-12379 bp Feature: domain Description: COG3499 Location: 11953-12 379 bp Feature: gene Location: 12432-13532 bp Ori: OCN59993.1 Feature: domain Description: D Location: 12447-13518 bp Feature: domain Description: D Location: 12 447-13518 bp Feature: gene Location: 14245-15018 bp Ori: OCN59994.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 14380-14833 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 14380-14833 bp Feature: gene Location: 15633-16115 bp Ori: OCN59995.1 Feature: domain Description: SmpB Location: 15663-16107 bp Feature: domain Description: SmpB Location: 15663-16107 bp Feature: gene Location: 16265-16702 bp Ori: OCN59996.1 Feature: domain Description: PRK10724 Location: 16268-16697 bp Feature: domain Description: PRK1072 4 Location: 162 68-16697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3499 (Phage protein U ), D (PHA02561), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: LJEE02000054.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:945169659 contig148, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 350-1442 bp Neighborhood of RT #1 [350, 1834] RVT-GII Feature: gene Location: 350-1834 bp Ori: OCN66427.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LJEE02000052.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:945169659 contig146, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 92-1355 bp Neighborhood of RT #1 [92, 1600] RVT-GII GIIM Feature: gene Location: 92-1600 bp Ori: OCN66484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)