myRT

myRT report for GCA_001316875.2_v02

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Seq: LJDY02000536.1 Escherichia coli strain ST167:947385799 contig484, whole genome shotgun sequence (3548 bp)
Overview 1 RT 1: 159-3522 bp Neighborhood of RT #1 [159, 3548] RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 159-680 bp Ori: OCO41155.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165-447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65-447 bp Feature: domain Description: GIIM Note: maturase Location: 495-675 bp Feature: domain Description: GIIM Note: maturase Location: 495-675 bp Feature: gene Location: 708-1247 bp Ori: OCO41156.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 038-1 1 1 6 bp Feature: gene Location: 1733-2638 bp Feature: gene Location: 2775-3548 bp Ori: OCO41158.1 Feature: domain Description: PFLE_PFLC Location: 2781-3522 bp Feature: domain Description: PFLE_PFLC Location: 2781 -3522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: LJDY02000317.1 Escherichia coli strain ST167:947385799 contig287, whole genome shotgun sequence (5629 bp)
Overview 1 RT 1: 37-5405 bp Neighborhood of RT #1 [37, 5410] umuC PRK10276 RVT-GII Intron_maturas2 HNHc PRK13704 Feature: gene Location: 37-1308 bp Ori: OCO53884.1 Feature: domain Description: umuC Location: 40-1300 bp Feature: domain Description: umuC Location: 40-1300 bp Feature: gene Location: 1308-1727 bp Ori: OCO53885.1 Feature: domain Description: PRK10276 Location: 1347-1713 bp Feature: domain Description: PRK102 76 Location: 1347-1713 bp Feature: gene Location: 2085-3986 bp Ori: OCO53886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352-3183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 352 -3183 bp Feature: domain Description: Intron_maturas2 Location: 3297-3555 bp Feature: domain Description: Intron_maturas2 Location: 32 97-3555 bp Feature: domain Description: HNHc Note: nucleases Location: 3729-3891 bp Feature: domain Description: HNHc Note: nucleases Location: 372 9-3891 bp Feature: gene Location: 4169-5062 bp Feature: gene Location: 5057-5410 bp Feature: domain Description: PRK13704 Location: 5060-5405 bp Feature: domain Description: PRK13704 Location: 5060-5405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13704 (plasmid SOS inhibition protein A; Provisional)

Seq: LJDY02000189.1 Escherichia coli strain ST167:947385799 contig171, whole genome shotgun sequence (8546 bp)
Overview 1 RT 1: 6408-8544 bp Neighborhood of RT #1 [6408, 8546] PRK09678 RVT-Retrons Feature: gene Location: 6408-6680 bp Ori: OCO58402.1 Feature: domain Description: PRK09678 Location: 6417-6573 bp Feature: domain Description: PRK09678 Location: 6417-6573 bp Feature: gene Location: 7326-8293 bp Feature: gene Location: 8295-8546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8397-8544 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83 97-8544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons

Seq: LJDY02000847.1 Escherichia coli strain ST167:947385799 contig764, whole genome shotgun sequence (1579 bp)
Overview 1 RT 1: 1-1343 bp Neighborhood of RT #1 [1, 1579] Arm-DNA-bind_3 RVT-Retrons Feature: gene Location: 1-612 bp Feature: domain Description: Arm-DNA-bind_3 Location: 10-262 bp Feature: domain Description: Arm-DNA-bind_3 Location: 10-262 bp Feature: gene Location: 1067-1579 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1085-1343 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1085-134 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons

Seq: LJDY02000743.1 Escherichia coli strain ST167:947385799 contig670, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 278-703 bp Feature: gene Location: 672-2180 bp Ori: OCO29129.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)