myRT

myRT report for GCA_001317005.2_34_S16v02

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Seq: LJEK02000023.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:957089165 contig119, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 60-1152 bp Neighborhood of RT #1 [60, 1544] RVT-GII Feature: gene Location: 60-1544 bp Ori: OCO05477.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1 1 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LJEK02000056.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:957089165 contig3, whole genome shotgun sequence (912 bp)
Overview 1 RT 1: 1-913 bp Neighborhood of RT #1 [1, 912] RVT-Retrons Feature: gene Location: 1-279 bp Feature: gene Location: 394-912 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 574-913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 574-913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: LJEK02000095.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:957089165 contig65, whole genome shotgun sequence (41609 bp)
Overview 1 RT 1: 11246-15993 bp Neighborhood of RT #1 [11246, 15998] COG3499 D RVT-UG11 SmpB PRK10724 Feature: gene Location: 11246-11731 bp Ori: OCN96763.1 Feature: domain Description: COG3499 Location: 11249-11675 bp Feature: domain Description: COG3 499 Location: 11249-11675 bp Feature: gene Location: 11728-12828 bp Ori: OCN96764.1 Feature: domain Description: D Location: 11743-12814 bp Feature: domain Description: D Location: 11743 -12814 bp Feature: gene Location: 13541-14314 bp Ori: OCN96765.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 13676-14129 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 13 676-14129 bp Feature: gene Location: 14929-15411 bp Ori: OCN96766.1 Feature: domain Description: SmpB Location: 14959-15403 bp Feature: domain Description: SmpB Location: 14959-15403 bp Feature: gene Location: 15561-15998 bp Ori: OCN96767.1 Feature: domain Description: PRK10724 Location: 15564-15993 bp Feature: domain Description: PRK10724 Location: 15564-15993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3499 (Phage protein U ), D (PHA02561), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: LJEK02000020.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:957089165 contig116, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 92-1355 bp Neighborhood of RT #1 [92, 1600] RVT-GII GIIM Feature: gene Location: 92-1600 bp Ori: OCO05490.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)