myRT

myRT report for GCA_001317015.2_35_S17v02

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Seq: LJEL02000005.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:957083320 contig102, whole genome shotgun sequence (42355 bp)
Overview 1 RT 1: 11964-16711 bp Neighborhood of RT #1 [11964, 16716] COG3499 D RVT-UG11 SmpB PRK10724 Feature: gene Location: 11964-12449 bp Ori: OCO11316.1 Feature: domain Description: COG3499 Location: 11967-12393 bp Feature: domain Description: COG3499 Location: 1 1 967-1 2393 bp Feature: gene Location: 12446-13546 bp Ori: OCO11317.1 Feature: domain Description: D Location: 12461-13532 bp Feature: domain Description: D Location: 1 2461 -1 3532 bp Feature: gene Location: 14259-15032 bp Ori: OCO11318.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 14394-14847 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 4394-1 4847 bp Feature: gene Location: 15647-16129 bp Ori: OCO11319.1 Feature: domain Description: SmpB Location: 15677-16121 bp Feature: domain Description: SmpB Location: 1 5677-1 61 21 bp Feature: gene Location: 16279-16716 bp Ori: OCO11320.1 Feature: domain Description: PRK10724 Location: 16282-16711 bp Feature: domain Description: PRK1 0724 Location: 1 6282-1 671 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3499 (Phage protein U ), D (PHA02561), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: LJEL02000068.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:957083320 contig16, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 350-1442 bp Neighborhood of RT #1 [350, 1834] RVT-GII Feature: gene Location: 350-1834 bp Ori: OCO05478.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752 -1442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LJEL02000155.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:957083320 contig9, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 92-1355 bp Neighborhood of RT #1 [92, 1600] RVT-GII GIIM Feature: gene Location: 92-1600 bp Ori: OCN96750.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 50-1082 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1157-13 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LJEL02000103.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:957083320 contig42, whole genome shotgun sequence (874 bp)
Overview 1 RT 1: 1-514 bp Neighborhood of RT #1 [1, 515] RVT-Retrons Feature: gene Location: 1-515 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 181-514 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 181-514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons