myRT

myRT report for GCA_001317375.2_36_S18v02

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Seq: LJEM02000065.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:945154233 contig157, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 92-1355 bp Neighborhood of RT #1 [92, 1600] RVT-GII GIIM Feature: gene Location: 92-1600 bp Ori: OCO06155.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1 082 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 57-1 355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LJEM02000148.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:945154233 contig92, whole genome shotgun sequence (42871 bp)
Overview 1 RT 1: 12508-17255 bp Neighborhood of RT #1 [12508, 17260] COG3499 D RVT-UG11 SmpB PRK10724 Feature: gene Location: 12508-12993 bp Ori: OCN97969.1 Feature: domain Description: COG3499 Location: 12511-12937 bp Feature: domain Description: COG3499 Location: 12 511-12 937 bp Feature: gene Location: 12990-14090 bp Ori: OCN97970.1 Feature: domain Description: D Location: 13005-14076 bp Feature: domain Description: D Location: 13005-14076 bp Feature: gene Location: 14803-15576 bp Ori: OCN97971.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 14938-15391 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 14938-15391 bp Feature: gene Location: 16191-16673 bp Ori: OCN97972.1 Feature: domain Description: SmpB Location: 16221-16665 bp Feature: domain Description: SmpB Location: 162 2 1-16665 bp Feature: gene Location: 16823-17260 bp Ori: OCN97973.1 Feature: domain Description: PRK10724 Location: 16826-17255 bp Feature: domain Description: PRK1072 4 Location: 1682 6-172 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3499 (Phage protein U ), D (PHA02561), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: LJEM02000101.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:945154233 contig5, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 60-1152 bp Neighborhood of RT #1 [60, 1544] RVT-GII Feature: gene Location: 60-1544 bp Ori: OCO04441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LJEM02000003.1 Klebsiella pneumoniae subsp. pneumoniae strain ST101:945154233 contig100, whole genome shotgun sequence (33500 bp)
Overview 1 RT 1: 28372-33111 bp Neighborhood of RT #1 [28372, 33500] a_cpa1 Nuc_deoxyrib_tr RVT-Retrons Feature: gene Location: 28372-30006 bp Feature: domain Description: a_cpa1 Location: 28399-30001 bp Feature: domain Description: a_cpa1 Location: 28399-30001 bp Feature: gene Location: 31217-32086 bp Ori: OCO12128.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 31739-31910 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 31739-31910 bp Feature: gene Location: 32742-33500 bp Ori: OCO12129.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32826-33111 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32826-33111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT a_cpa1 (TIGR00831), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons