myRT

myRT report for GCA_001317545.1_CBN_34

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Seq: LJXB01000005.1 Pseudomonas fluorescens strain S613 AN403.Contig352, whole genome shotgun sequence (923 bp)
Overview 1 RT 1: 133-634 bp Neighborhood of RT #1 [133, 885] RVT-GII GIIM Feature: gene Location: 133-885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136-358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36-358 bp Feature: domain Description: GIIM Note: maturase Location: 412-634 bp Feature: domain Description: GIIM Note: maturase Location: 41 2-634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LJXB01000016.1 Pseudomonas fluorescens strain S613 AN403.Contig405, whole genome shotgun sequence (952 bp)
Overview 1 RT 1: 38-641 bp Neighborhood of RT #1 [38, 808] RVT-GII GIIM Feature: gene Location: 38-808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122-359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 -359 bp Feature: domain Description: GIIM Note: maturase Location: 416-641 bp Feature: domain Description: GIIM Note: maturase Location: 416-641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LJXB01000001.1 Pseudomonas fluorescens strain S613 AN403.Contig165, whole genome shotgun sequence (2300 bp)
Overview 1 RT 1: 1371-1725 bp Neighborhood of RT #1 [1371, 2117] RVT-GII Feature: gene Location: 1371-2117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1416-1725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1416-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LJXB01000024.1 Pseudomonas fluorescens strain S613 AN403.Contig422, whole genome shotgun sequence (5344 bp)
Overview 1 RT 1: 307-5272 bp Neighborhood of RT #1 [307, 5295] PRK05671 FimV RVT-GII Feature: gene Location: 307-1317 bp Feature: domain Description: PRK05671 Location: 310-1312 bp Feature: domain Description: PRK05671 Location: 310-1312 bp Feature: gene Location: 1423-4038 bp Feature: domain Description: FimV Location: 1429-4036 bp Feature: domain Description: FimV Location: 14 29-4 036 bp Feature: gene Location: 4618-5295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4879-5272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 879-5272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LJXB01000044.1 Pseudomonas fluorescens strain S613 AN403.Contig443, whole genome shotgun sequence (17919 bp)
Overview 1 RT 1: 14370-17214 bp Neighborhood of RT #1 [14370, 17237] Resolvase Recombinase Zn_ribbon_recom RVT-GII Feature: gene Location: 14370-16265 bp Feature: domain Description: Resolvase Location: 14391-14829 bp Feature: domain Description: Resolvase Location: 14391-14829 bp Feature: domain Description: Recombinase Location: 14925-15282 bp Feature: domain Description: Recombinase Location: 14925 -15 282 bp Feature: domain Description: Zn_ribbon_recom Location: 15321-15525 bp Feature: domain Description: Zn_ribbon_recom Location: 15 321-15 5 25 bp Feature: gene Location: 16262-16444 bp Feature: gene Location: 16560-17237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16821-17214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16821-17214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII

Seq: LJXB01000072.1 Pseudomonas fluorescens strain S613 AN403.Contig471, whole genome shotgun sequence (124770 bp)
Overview 1 RT 1: 83-3372 bp Neighborhood of RT #1 [83, 3398] RVT-GII stp Tautomerase_2 Feature: gene Location: 83-700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-6 6 5 bp Feature: gene Location: 1373-2653 bp Feature: domain Description: stp Location: 1442-2618 bp Feature: domain Description: stp Location: 1442-26 18 bp Feature: gene Location: 3015-3398 bp Feature: domain Description: Tautomerase_2 Location: 3129-3372 bp Feature: domain Description: Tautomerase_2 Location: 3129-3372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT stp (TIGR00814), Tautomerase_2 (pfam14552), RVT-GII

Seq: LJXB01000031.1 Pseudomonas fluorescens strain S613 AN403.Contig429, whole genome shotgun sequence (14654 bp)
Overview 1 RT 1: 12375-14522 bp Neighborhood of RT #1 [12375, 14533] Tautomerase_3 RVT-GII Feature: gene Location: 12375-12860 bp Feature: domain Description: Tautomerase_3 Location: 12378-12783 bp Feature: domain Description: Tautomerase_3 Location: 1237 8-127 83 bp Feature: gene Location: 13534-13719 bp Feature: gene Location: 13916-14533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14147-14522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14147 -14522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tautomerase_3 (pfam14832), RVT-GII

Seq: LJXB01000078.1 Pseudomonas fluorescens strain S613 AN403.Contig477, whole genome shotgun sequence (127109 bp)
Overview 1 RT 1: 46234-57718 bp Neighborhood of RT #1 [46234, 57729] Bac_GDH RVT-GII Resolvase Recombinase Zn_ribbon_recom PRK12448 Feature: gene Location: 46234-46590 bp Feature: gene Location: 47095-51990 bp Feature: domain Description: Bac_GDH Location: 47326-51922 bp Feature: domain Description: Bac_GDH Location: 47326-51922 bp Feature: gene Location: 52471-53172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52756-53149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52756-53149 bp Feature: gene Location: 53467-55188 bp Feature: domain Description: Resolvase Location: 53491-53926 bp Feature: domain Description: Resolvase Location: 53491-53926 bp Feature: domain Description: Recombinase Location: 54022-54379 bp Feature: domain Description: Recombinase Location: 54022-54379 bp Feature: domain Description: Zn_ribbon_recom Location: 54418-54622 bp Feature: domain Description: Zn_ribbon_recom Location: 54418 -54622 bp Feature: gene Location: 55888-57729 bp Feature: domain Description: PRK12448 Location: 55894-57718 bp Feature: domain Description: PRK12448 Location: 558 94-57718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_GDH (pfam05088), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), PRK12448 (dihydroxy-acid dehydratase; Provisional)

Seq: LJXB01000037.1 Pseudomonas fluorescens strain S613 AN403.Contig436, whole genome shotgun sequence (20394 bp)
Overview 1 RT 1: 57-2541 bp Neighborhood of RT #1 [57, 2541] RVT-GII GIIM ALDH_F6_MMSDH Feature: gene Location: 57-821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-378 bp Feature: domain Description: GIIM Note: maturase Location: 435-660 bp Feature: domain Description: GIIM Note: maturase Location: 435-660 bp Feature: gene Location: 907-2400 bp Feature: domain Description: ALDH_F6_MMSDH Location: 922-2350 bp Feature: domain Description: ALDH_F6_MMSDH Location: 9 22-2350 bp Feature: gene Location: 2434-2541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ALDH_F6_MMSDH (cd07085)