myRT

myRT report for GCA_001319825.1_5139_1_1

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Seq: CVMG01000021.1 Yersinia pseudotuberculosis genome assembly 5139_1#1, scaffold ERS008478SCcontig000021, whole genome shotgun sequence (80571 bp)
Overview 1 RT 1: 76041-78533 bp Neighborhood of RT #1 [76041, 78550] HTH_XRE RVT-Retrons phage_P2_V W Feature: gene Location: 76041-76205 bp Feature: gene Location: 76237-76554 bp Feature: domain Description: HTH_XRE Location: 76252-76414 bp Feature: domain Description: HTH_XRE Location: 76252-7641 4 bp Feature: gene Location: 76529-77461 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76706-77243 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76706-77243 bp Feature: gene Location: 77562-78203 bp Feature: domain Description: phage_P2_V Location: 77598-78189 bp Feature: domain Description: phage_P2_V Location: 77598-781 89 bp Feature: gene Location: 78200-78550 bp Feature: domain Description: W Location: 78227-78533 bp Feature: domain Description: W Location: 78227-78533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, phage_P2_V (TIGR01644), W (PHA02516)

Seq: CVMG01000041.1 Yersinia pseudotuberculosis genome assembly 5139_1#1, scaffold ERS008478SCcontig000041, whole genome shotgun sequence (36394 bp)
Overview 1 RT 1: 693-4343 bp Neighborhood of RT #1 [693, 4343] PHA02517 rve RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Feature: gene Location: 693-1229 bp Feature: domain Description: PHA02517 Location: 729-906 bp Feature: domain Description: PHA02 517 Location: 72 9-906 bp Feature: domain Description: rve Location: 1095-1221 bp Feature: domain Description: rve Location: 1095-12 2 1 bp Feature: gene Location: 1658-2602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1661-2315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1661-2 315 bp Feature: gene Location: 3773-4045 bp Feature: domain Description: Zn_Tnp_IS1 Location: 3776-3878 bp Feature: domain Description: Zn_Tnp_IS1 Location: 3776-3878 bp Feature: domain Description: HTH_Tnp_IS1 Location: 3899-4034 bp Feature: domain Description: HTH_Tnp_IS1 Location: 3899-4034 bp Feature: gene Location: 4062-4343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), PHA02517 (putative transposase OrfB; Reviewed), rve (pfam00665)