myRT

myRT report for GCA_001319845.1_4821_6_8

Download annotations/find similar RTs

Seq: CGBL01000001.1 Yersinia aleksiciae genome assembly 4821_6#8, scaffold ERS008671SCcontig000001, whole genome shotgun sequence (437972 bp)
Overview 1 RT 1: 160265-163391 bp 2 RT 2: 176649-181736 bp Neighborhood of RT #1 [160265, 163405] tail_comp_S RVT-Retrons CSD phage_P2_V Neighborhood of RT #2 [176649, 181900] D PRK09678 RVT-Retrons Trypsin_2 int HTH_19 Feature: gene Location: 160265-160714 bp Ori: CFQ33608.1 Feature: domain Description: tail_comp_S Location: 160289-160706 bp Feature: domain Description: tail_comp_S Location: 1 60289-1 60706 bp Feature: gene Location: 161059-161268 bp Feature: gene Location: 161301-162479 bp Ori: CFQ33614.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 161439-162015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 61 439-1 6201 5 bp Feature: gene Location: 162476-162691 bp Ori: CFQ33616.1 Gene: cspE2_1 Feature: domain Description: CSD Location: 162500-162683 bp Feature: domain Description: CSD Location: 1 62500-1 62683 bp Feature: gene Location: 162764-163405 bp Ori: CFQ33620.1 Feature: domain Description: phage_P2_V Location: 162800-163391 bp Feature: domain Description: phage_P2_V Location: 1 62800-1 63391 bp Feature: gene Location: 176649-177791 bp Ori: CFQ33696.1 Feature: domain Description: D Location: 176652-177765 bp Feature: domain Description: D Location: 1 76652-1 77765 bp Feature: gene Location: 177884-178102 bp Ori: CFQ33701.1 Feature: domain Description: PRK09678 Location: 177887-178097 bp Feature: domain Description: PRK09678 Location: 1 77887-1 78097 bp Feature: gene Location: 178310-179968 bp Ori: CFQ33706.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 178439-179051 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 78439-1 79051 bp Feature: domain Description: Trypsin_2 Location: 179429-179873 bp Feature: domain Description: Trypsin_2 Location: 1 79429-1 79873 bp Feature: gene Location: 180049-181119 bp Ori: CFQ33711.1 Gene: xerD_1 Feature: domain Description: int Location: 180052-181060 bp Feature: domain Description: int Location: 1 80052-1 81 060 bp Feature: gene Location: 181550-181900 bp Ori: CFQ33716.1 Feature: domain Description: HTH_19 Location: 181571-181736 bp Feature: domain Description: HTH_1 9 Location: 1 81 571 -1 81 736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tail_comp_S (TIGR01635), RVT-Retrons, CSD (pfam00313), phage_P2_V (TIGR01644), D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), Trypsin_2 (pfam13365), int (PHA02601), HTH_19 (pfam12844)