myRT

myRT report for GCA_001319865.1_ASM131986v1

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Seq: BBSL01000031.1 Burkholderia sp. E7m39 DNA, contig: contig00031, whole genome shotgun sequence (61015 bp)
Overview 1 RT 1: 39624-48236 bp Neighborhood of RT #1 [39624, 48301] 46 46 DUF3732 RVT-Retrons AAA_13 Feature: gene Location: 39624-40835 bp Feature: gene Location: 41303-43300 bp Feature: domain Description: 46 Location: 41348-41456 bp Feature: domain Description: 46 Location: 41 348-41 456 bp Feature: domain Description: 46 Location: 42143-42638 bp Feature: domain Description: 46 Location: 421 43-42638 bp Feature: domain Description: DUF3732 Location: 42707-43259 bp Feature: domain Description: DUF3732 Location: 42707-43259 bp Feature: gene Location: 43564-45240 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43624-44266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43624-44266 bp Feature: gene Location: 45586-46014 bp Feature: gene Location: 45968-48301 bp Feature: domain Description: AAA_13 Location: 46004-48236 bp Feature: domain Description: AAA_1 3 Location: 46004-48236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 46 (PHA02562), DUF3732 (pfam12532), RVT-Retrons, AAA_13 (pfam13166)

Seq: BBSL01000104.1 Burkholderia sp. E7m39 DNA, contig: contig00104, whole genome shotgun sequence (10072 bp)
Overview 1 RT 1: 4649-10071 bp Neighborhood of RT #1 [4649, 10071] ilvH PRK05479 RVT_N RVT-GII GIIM HNHc PRK05305 Feature: gene Location: 4649-5224 bp Feature: domain Description: ilvH Location: 4736-5213 bp Feature: domain Description: ilvH Location: 4736-52 13 bp Feature: gene Location: 5321-6337 bp Feature: domain Description: PRK05479 Location: 5324-6305 bp Feature: domain Description: PRK05479 Location: 532 4-6305 bp Feature: gene Location: 7455-9155 bp Feature: RT Description: RVT_N Location: 7512-7755 bp Feature: RT Description: RVT_N Location: 7512 -7755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7800-8448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7800-8448 bp Feature: domain Description: GIIM Note: maturase Location: 8499-8733 bp Feature: domain Description: GIIM Note: maturase Location: 8499-8733 bp Feature: domain Description: HNHc Note: nucleases Location: 8970-9117 bp Feature: domain Description: HNHc Note: nucleases Location: 8970-9117 bp Feature: gene Location: 9272-9910 bp Feature: domain Description: PRK05305 Location: 9296-9905 bp Feature: domain Description: PRK05305 Location: 92 96-9905 bp Feature: gene Location: 9931-10071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein)

Seq: BBSL01000254.1 Burkholderia sp. E7m39 DNA, contig: contig00254, whole genome shotgun sequence (57930 bp)
Overview 1 RT 1: 15268-18987 bp Neighborhood of RT #1 [15268, 19022] GH25_muramidase PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 15268-15843 bp Feature: domain Description: GH25_muramidase Location: 15283-15763 bp Feature: domain Description: GH25_muramidase Location: 15283 -15763 bp Feature: gene Location: 15883-16347 bp Feature: domain Description: PHA02517 Location: 15886-16318 bp Feature: domain Description: PHA02517 Location: 15886-163 18 bp Feature: gene Location: 16464-17996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16737-17475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1673 7-17475 bp Feature: domain Description: GIIM Note: maturase Location: 17589-17748 bp Feature: domain Description: GIIM Note: maturase Location: 17589-17748 bp Feature: gene Location: 18062-18328 bp Feature: gene Location: 18624-19022 bp Feature: domain Description: PHA02517 Location: 18627-18987 bp Feature: domain Description: PHA02517 Location: 18627-18987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH25_muramidase (cl10448), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)