myRT

myRT report for GCA_001319995.1_ASM131999v1

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Seq: BCAS01000003.1 Pseudomonas sp. GTC 16482 DNA, contig: PPU37_CON00003, whole genome shotgun sequence (170691 bp)
Overview 1 RT 1: 164685-170355 bp Neighborhood of RT #1 [164685, 170405] PRK07232 MrcA RVT_N RVT-GII YkfC HNH Feature: gene Location: 164685-165962 bp Feature: domain Description: PRK07232 Location: 164703-165912 bp Feature: domain Description: PRK07232 Location: 1 64703-1 6591 2 bp Feature: gene Location: 166117-168645 bp Feature: domain Description: MrcA Location: 166198-168571 bp Feature: domain Description: MrcA Location: 1 661 98-1 68571 bp Feature: gene Location: 168699-170405 bp Feature: domain Description: RVT_N Location: 168756-168999 bp Feature: domain Description: RVT_N Location: 1 68756-1 68999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169044-169680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 69044-1 69680 bp Feature: domain Description: YkfC Location: 169878-170031 bp Feature: domain Description: YkfC Location: 1 69878-1 70031 bp Feature: domain Description: HNH Note: nucleases Location: 170217-170355 bp Feature: domain Description: HNH Note: nucleases Location: 1 7021 7-1 70355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), MrcA (COG5009), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: BCAS01000105.1 Pseudomonas sp. GTC 16482 DNA, contig: PPU37_CON00105, whole genome shotgun sequence (20829 bp)
Overview 1 RT 1: 17364-20826 bp Neighborhood of RT #1 [17364, 20826] RdgC RVT-GII GIIM Feature: gene Location: 17364-18290 bp Feature: domain Description: RdgC Location: 17373-18273 bp Feature: domain Description: RdgC Location: 17373-182 73 bp Feature: gene Location: 18444-18629 bp Feature: gene Location: 18764-20185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19121-19736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1912 1-19736 bp Feature: domain Description: GIIM Note: maturase Location: 19793-20006 bp Feature: domain Description: GIIM Note: maturase Location: 19793-2 0006 bp Feature: gene Location: 20377-20826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RdgC (pfam04381), RVT-GII, GIIM (pfam08388)

Seq: BCAS01000109.1 Pseudomonas sp. GTC 16482 DNA, contig: PPU37_CON00109, whole genome shotgun sequence (19794 bp)
Overview 1 RT 1: 14892-17667 bp Neighborhood of RT #1 [14892, 17667] RVT-GII GIIM Feature: gene Location: 14892-15074 bp Feature: gene Location: 15222-15407 bp Feature: gene Location: 15542-16963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15899-16514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15899-16514 bp Feature: domain Description: GIIM Note: maturase Location: 16571-16796 bp Feature: domain Description: GIIM Note: maturase Location: 16571-16796 bp Feature: gene Location: 17114-17332 bp Feature: gene Location: 17365-17667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BCAS01000138.1 Pseudomonas sp. GTC 16482 DNA, contig: PPU37_CON00138, whole genome shotgun sequence (14412 bp)
Overview 1 RT 1: 12351-14244 bp Neighborhood of RT #1 [12351, 14411] RVT-GII GIIM Feature: gene Location: 12351-12668 bp Feature: gene Location: 13065-13232 bp Feature: gene Location: 13353-14411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13359-13962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13359-13962 bp Feature: domain Description: GIIM Note: maturase Location: 14016-14244 bp Feature: domain Description: GIIM Note: maturase Location: 14 016-14 24 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BCAS01000230.1 Pseudomonas sp. GTC 16482 DNA, contig: PPU37_CON00230, whole genome shotgun sequence (4000 bp)
Overview 1 RT 1: 283-3415 bp Neighborhood of RT #1 [283, 3807] PRK06850 RVT-GII Feature: gene Location: 283-456 bp Feature: gene Location: 513-1955 bp Feature: domain Description: PRK06850 Location: 684-1662 bp Feature: domain Description: PRK0685 0 Location: 684-1662 bp Feature: gene Location: 2041-3807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725-3415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725 -3415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06850 (hypothetical protein; Provisional), RVT-GII

Seq: BCAS01000234.1 Pseudomonas sp. GTC 16482 DNA, contig: PPU37_CON00234, whole genome shotgun sequence (3789 bp)
Overview 1 RT 1: 690-3788 bp Neighborhood of RT #1 [690, 3788] HTH_3 RVT-UG15 Feature: gene Location: 690-1055 bp Feature: domain Description: HTH_3 Location: 816-915 bp Feature: domain Description: HTH_3 Location: 816 -915 bp Feature: gene Location: 1179-1319 bp Feature: gene Location: 1465-3147 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1912-2320 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1912-2320 bp Feature: gene Location: 3158-3319 bp Feature: gene Location: 3501-3788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), RVT-UG15

Seq: BCAS01000267.1 Pseudomonas sp. GTC 16482 DNA, contig: PPU37_CON00267, whole genome shotgun sequence (1097 bp)
Overview 1 RT 1: 2-857 bp Neighborhood of RT #1 [2, 1024] RVT-GII GIIM Feature: gene Location: 2-1024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-57 5 bp Feature: domain Description: GIIM Note: maturase Location: 629-857 bp Feature: domain Description: GIIM Note: maturase Location: 629-857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)