myRT

myRT report for GCA_001320165.1_ASM132016v1

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Seq: BCAX01000015.1 Pseudomonas sp. NBRC 111121 DNA, contig: PP6_CON01201, whole genome shotgun sequence (157767 bp)
Overview 1 RT 1: 118636-125582 bp Neighborhood of RT #1 [118636, 125582] PRK10770 LptD RVT_N RVT-GII YkfC HNH Feature: gene Location: 118636-119961 bp Feature: domain Description: PRK10770 Location: 118717-119929 bp Feature: domain Description: PRK1 0770 Location: 1 1 871 7-1 1 9929 bp Feature: gene Location: 119936-122719 bp Feature: domain Description: LptD Location: 120227-122702 bp Feature: domain Description: LptD Location: 1 20227-1 22702 bp Feature: gene Location: 122895-124607 bp Feature: domain Description: RVT_N Location: 122952-123195 bp Feature: domain Description: RVT_N Location: 1 22952-1 231 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123240-123873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 23240-1 23873 bp Feature: domain Description: YkfC Location: 124086-124236 bp Feature: domain Description: YkfC Location: 1 24086-1 24236 bp Feature: domain Description: HNH Note: nucleases Location: 124413-124551 bp Feature: domain Description: HNH Note: nucleases Location: 1 2441 3-1 24551 bp Feature: gene Location: 125029-125298 bp Feature: gene Location: 125448-125582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: BCAX01000034.1 Pseudomonas sp. NBRC 111121 DNA, contig: PP6_CON02801, whole genome shotgun sequence (89666 bp)
Overview 1 RT 1: 41238-46337 bp Neighborhood of RT #1 [41238, 46337] ALDH_F5_SSADH_GabD IS5 RVT-GII GIIM Tra8 Feature: gene Location: 41238-42683 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 41322-42669 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 4132 2 -42 669 bp Feature: gene Location: 43056-43589 bp Feature: domain Description: IS5 Location: 43122-43557 bp Feature: domain Description: IS5 Location: 4312 2 -43557 bp Feature: gene Location: 43600-44688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43648-44305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43648-44305 bp Feature: domain Description: GIIM Note: maturase Location: 44383-44605 bp Feature: domain Description: GIIM Note: maturase Location: 44383-44605 bp Feature: gene Location: 44826-45845 bp Feature: domain Description: Tra8 Location: 44829-45813 bp Feature: domain Description: Tra8 Location: 4482 9-45813 bp Feature: gene Location: 46065-46337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_F5_SSADH_GabD (cd07103), IS5 (COG3039), RVT-GII, GIIM (pfam08388), Tra8 (COG2826)

Seq: BCAX01000046.1 Pseudomonas sp. NBRC 111121 DNA, contig: PP6_CON03901, whole genome shotgun sequence (54972 bp)
Overview 1 RT 1: 49756-54891 bp Neighborhood of RT #1 [49756, 54891] DUF262 DUF1524 RVT-UG15 Feature: gene Location: 49756-51657 bp Feature: domain Description: DUF262 Location: 49846-50503 bp Feature: domain Description: DUF262 Location: 49846-50503 bp Feature: domain Description: DUF1524 Location: 51127-51619 bp Feature: domain Description: DUF1524 Location: 51127-51619 bp Feature: gene Location: 52126-52266 bp Feature: gene Location: 52649-54331 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 53096-53504 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 53 096-53 504 bp Feature: gene Location: 54685-54891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), DUF1524 (pfam07510), RVT-UG15

Seq: BCAX01000118.1 Pseudomonas sp. NBRC 111121 DNA, contig: PP6_CON90139, whole genome shotgun sequence (1225 bp)
Overview 1 RT 1: 287-1223 bp Neighborhood of RT #1 [287, 1222] RVT_N RVT-GII Feature: gene Location: 287-1222 bp Feature: domain Description: RVT_N Location: 344-587 bp Feature: domain Description: RVT_N Location: 34 4 -587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632-1223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: BCAX01000120.1 Pseudomonas sp. NBRC 111121 DNA, contig: PP6_CON90141, whole genome shotgun sequence (1104 bp)
Overview 1 RT 1: 73-934 bp Neighborhood of RT #1 [73, 1101] RVT-GII GIIM Feature: gene Location: 73-1101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-65 2 bp Feature: domain Description: GIIM Note: maturase Location: 706-934 bp Feature: domain Description: GIIM Note: maturase Location: 706-934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)