myRT

myRT report for GCA_001320345.1_ASM132034v1

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Seq: BCBD01000003.1 Pseudomonas sp. NBRC 111127 DNA, contig: PPU12_CON00003, whole genome shotgun sequence (96263 bp)
Overview 1 RT 1: 70714-76944 bp Neighborhood of RT #1 [70714, 76961] SUA5 Smf RVT_N RVT-GII YkfC HNH def fmt Feature: gene Location: 70714-71271 bp Feature: domain Description: SUA5 Location: 70732-71269 bp Feature: domain Description: SUA5 Location: 70732-71 269 bp Feature: gene Location: 71313-72410 bp Feature: domain Description: Smf Location: 71349-72402 bp Feature: domain Description: Smf Location: 71 349-72402 bp Feature: gene Location: 73648-75354 bp Feature: RT Description: RVT_N Location: 73705-73948 bp Feature: RT Description: RVT_N Location: 73705-73948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73993-74626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73993-74626 bp Feature: domain Description: YkfC Location: 74827-74989 bp Feature: domain Description: YkfC Location: 74827-74989 bp Feature: domain Description: HNH Note: nucleases Location: 75166-75304 bp Feature: domain Description: HNH Note: nucleases Location: 751 66-75304 bp Feature: gene Location: 75462-75968 bp Feature: domain Description: def Location: 75465-75951 bp Feature: domain Description: def Location: 75465-75951 bp Feature: gene Location: 76029-76961 bp Feature: domain Description: fmt Location: 76032-76944 bp Feature: domain Description: fmt Location: 76032-76944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUA5 (pfam03481), Smf (COG0758), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), def (PRK00150), fmt (TIGR00460)

Seq: BCBD01000043.1 Pseudomonas sp. NBRC 111127 DNA, contig: PPU12_CON00043, whole genome shotgun sequence (35402 bp)
Overview 1 RT 1: 590-4419 bp Neighborhood of RT #1 [590, 4419] RVT-Retrons Trypsin_2 Feature: gene Location: 590-2284 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 740-1349 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 740-1349 bp Feature: domain Description: Trypsin_2 Location: 1754-2186 bp Feature: domain Description: Trypsin_2 Location: 1754-2 186 bp Feature: gene Location: 3097-3852 bp Feature: gene Location: 3871-4419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365)