myRT

myRT report for GCA_001320385.1_ASM132038v1

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Seq: BCBE01000003.1 Pseudomonas sp. NBRC 111128 DNA, contig: PPU39_CON00003, whole genome shotgun sequence (124293 bp)
Overview 1 RT 1: 45306-53578 bp Neighborhood of RT #1 [45306, 53628] PRK07232 MrcA RVT_N RVT-GII YkfC HNH PilM PilN Feature: gene Location: 45306-46583 bp Feature: domain Description: PRK07232 Location: 45324-46533 bp Feature: domain Description: PRK07232 Location: 45324-46533 bp Feature: gene Location: 46739-49267 bp Feature: domain Description: MrcA Location: 46820-49190 bp Feature: domain Description: MrcA Location: 46820-491 90 bp Feature: gene Location: 49321-51027 bp Feature: RT Description: RVT_N Location: 49378-49621 bp Feature: RT Description: RVT_N Location: 49378-49621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49666-50302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49666-50302 bp Feature: domain Description: YkfC Location: 50500-50656 bp Feature: domain Description: YkfC Location: 50500-50656 bp Feature: domain Description: HNH Note: nucleases Location: 50839-50977 bp Feature: domain Description: HNH Note: nucleases Location: 50839-50977 bp Feature: gene Location: 52160-53095 bp Feature: domain Description: PilM Location: 52217-52751 bp Feature: domain Description: PilM Location: 5221 7-52751 bp Feature: gene Location: 53092-53628 bp Feature: domain Description: PilN Location: 53095-53578 bp Feature: domain Description: PilN Location: 53095-53578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), MrcA (COG5009), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PilM (pfam07419), PilN (pfam05137)

Seq: BCBE01000119.1 Pseudomonas sp. NBRC 111128 DNA, contig: PPU39_CON00119, whole genome shotgun sequence (13006 bp)
Overview 1 RT 1: 2465-5851 bp Neighborhood of RT #1 [2465, 5851] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 2465-3040 bp Feature: domain Description: DUF1566 Location: 2795-3026 bp Feature: domain Description: DUF1566 Location: 2 795-302 6 bp Feature: gene Location: 3093-3446 bp Feature: domain Description: Avd_like Location: 3120-3426 bp Feature: domain Description: Avd_like Location: 312 0-342 6 bp Feature: gene Location: 3645-4802 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3894-4650 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3894-4650 bp Feature: gene Location: 4884-5480 bp Feature: gene Location: 5477-5851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs