myRT

myRT report for GCA_001320435.1_ASM132043v1

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Seq: BCBF01000039.1 Pseudomonas sp. NBRC 111129 DNA, contig: PPU13_CON00039, whole genome shotgun sequence (47670 bp)
Overview 1 RT 1: 38826-43964 bp Neighborhood of RT #1 [38826, 44047] Ftsk_gamma HIRAN IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 38826-39671 bp Feature: domain Description: Ftsk_gamma Location: 39006-39180 bp Feature: domain Description: Ftsk_gamma Location: 39006-391 80 bp Feature: domain Description: HIRAN Location: 39435-39570 bp Feature: domain Description: HIRAN Location: 39435-39570 bp Feature: gene Location: 39928-40386 bp Feature: domain Description: IS5 Location: 39931-40360 bp Feature: domain Description: IS5 Location: 39931 -40360 bp Feature: gene Location: 40458-41726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40671-41328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40671 -41 328 bp Feature: domain Description: GIIM Note: maturase Location: 41406-41628 bp Feature: domain Description: GIIM Note: maturase Location: 41 406-41 628 bp Feature: gene Location: 42219-42758 bp Feature: domain Description: IS5 Location: 42408-42735 bp Feature: domain Description: IS5 Location: 42408-42735 bp Feature: gene Location: 43220-44047 bp Feature: domain Description: ABC_phnC Location: 43250-43964 bp Feature: domain Description: ABC_phnC Location: 43250-43964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ftsk_gamma (smart00843), HIRAN (smart00910), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)

Seq: BCBF01000118.1 Pseudomonas sp. NBRC 111129 DNA, contig: PPU13_CON00118, whole genome shotgun sequence (14944 bp)
Overview 1 RT 1: 9263-13966 bp Neighborhood of RT #1 [9263, 13966] HDc DDE_Tnp_IS66_C RVT_N RVT-GII GIIM COG3436 DDE_Tnp_IS66 Feature: gene Location: 9263-10066 bp Feature: domain Description: HDc Location: 9464-9839 bp Feature: domain Description: HDc Location: 9464-9839 bp Feature: gene Location: 10102-10281 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 10153-10264 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 10153-102 64 bp Feature: gene Location: 10428-12089 bp Feature: RT Description: RVT_N Location: 10473-10716 bp Feature: RT Description: RVT_N Location: 10473-10716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10761-11397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10761-11397 bp Feature: domain Description: GIIM Note: maturase Location: 11454-11682 bp Feature: domain Description: GIIM Note: maturase Location: 11454-11682 bp Feature: gene Location: 12462-13703 bp Feature: domain Description: COG3436 Location: 12873-13167 bp Feature: domain Description: COG3436 Location: 12 873-13167 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13182-13500 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13182 -13500 bp Feature: gene Location: 13775-13966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), HDc (smart00471)